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plotpca
•
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0
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2
replies
1.0k
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Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
17 months ago • updated 16 months ago
yee
• 0
1
vote
5
replies
1.3k
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 18 months ago by
Michael Love
43k • written 18 months ago by
sara.jacobson
• 0
0
votes
3
replies
5.7k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 2.0 years ago by
hediatnani
• 0 • written 2.1 years ago by
Yijing
• 0
3
votes
5
replies
3.4k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
updated 10 months ago by
Daniele
• 0 • written 3.2 years ago by
synat.keam
• 0
3
votes
3
replies
9.7k
views
Adding sample label to PCA plot
plotpca
DESeq2
3.3 years ago
bjen731
▴ 10
2
votes
2
replies
1.9k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
4.0 years ago
elizabethe819
• 0
1
vote
1
reply
1.2k
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
s1760083
• 0
0
votes
3
replies
1.4k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 5.2 years ago by
Michael Love
43k • written 5.2 years ago by
ecg1g15
▴ 30
0
votes
1
reply
836
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 6.6 years ago by
Michael Love
43k • written 6.6 years ago by
N. Perera
• 0
0
votes
1
reply
856
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 6.6 years ago by
Michael Love
43k • written 6.6 years ago by
snp31
• 0
12
votes
1
reply
8.2k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
lirongrossmann
▴ 80
0
votes
6
replies
3.9k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
7.6 years ago
lirongrossmann
▴ 80
2
votes
4
replies
3.6k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
7.7 years ago
Jane Merlevede
▴ 90
14
votes
5
replies
48k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 8.3 years ago by
Federico Marini
▴ 180 • written 8.3 years ago by
al-ash
▴ 50
0
votes
0
replies
1.2k
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
8.5 years ago
marianarochadesouza
• 0
0
votes
3
replies
1.8k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
8.9 years ago
newsomew13
• 0
16 results • Page
1 of 1
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Answer: Version conflict when pushing to scQTLtools devel branch
by
shepherl
4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Thank you very much for pointing out this shortcoming. I will improve it.
Comment: samtools loading in R
by
Charlie
• 0
This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
njmcdirect
• 0
https://www.www-njmcdirect.run/
Votes
Bioconductor 3.21 is Released!
DiffBind - question on the use of filtered or unfiltered input data
Answer: Enhanced Volcano Error when drawing connectors
Answer: Origin of the labels for the SingleCellMultiModal dataset
Answer: PhD scholar
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