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plotcounts
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PlotCounts DESeq2 - how to plot count s for specific samples?
DESeq2
PlotCounts
2.2 years ago
annamariabugaj
▴ 10
1
vote
4
replies
2.9k
views
plotCounts to visualize variations of a specific genes along conditions
DESeq2
plotCounts
vst
updated 2.5 years ago by
Michael Love
43k • written 2.5 years ago by
Laia
▴ 10
0
votes
2
replies
2.2k
views
How to plot gene counts using plotCounts() with just an individual contrast?
DESeq2
plotCounts
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
elizabethe819
• 0
0
votes
1
reply
1.3k
views
Deseq2 how to get input data for plotCounts for a single gene
deseq2
plotcounts
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
sunthomas
• 0
0
votes
1
reply
1.7k
views
plot statistic values in a DEseq2 plotCounts plot
deseq2
plotCounts
pvalues
RNAseq
updated 5.3 years ago by
Michael Love
43k • written 5.3 years ago by
anne.hoffrichter
• 0
0
votes
3
replies
2.4k
views
Change order of conditions when plotting: plotCounts {DESeq2}
R
deseq2
plotcounts
5.9 years ago
ecg1g15
▴ 30
0
votes
5
replies
1.7k
views
Error DESeq2 plotCounts invalid class DESeqDataSet object undefined class for slot rowRanges GenomicRangesORGRangesList
deseq2
plotCounts
rowRanges
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
I.Castanho
▴ 50
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Comment: DiffBind can't find a DAR
by
Mengjun
• 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Thank you very much for pointing out this shortcoming. I will improve it.
Comment: samtools loading in R
by
Charlie
• 0
This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
njmcdirect
• 0
https://www.www-njmcdirect.run/
Answer: DiffBind - question on the use of filtered or unfiltered input data
by
blackleatherjackets.blj
• 0
Great discussion! Clarifying filtered vs. unfiltered input in DiffBind really helps deepen understanding. Appreciate the detailed responses…
Votes
DiffBind - question on the use of filtered or unfiltered input data
Answer: Enhanced Volcano Error when drawing connectors
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Answer: how to use `arrayWeightsQuick()`?
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