Bioconductor Plotcounts

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DESeq2 PlotCounts

22 months ago annamariabugaj ▴ 10

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DESeq2 plotCounts vst

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by Laia ▴ 10

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1.9k

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DESeq2 plotCounts

updated 3.6 years ago by Michael Love 43k • written 3.6 years ago by elizabethe819 • 0

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deseq2 plotcounts

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by sunthomas • 0

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1.6k

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deseq2 plotCounts pvalues RNAseq

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by anne.hoffrichter • 0

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R deseq2 plotcounts

5.6 years ago ecg1g15 ▴ 30

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deseq2 plotCounts rowRanges

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by I.Castanho ▴ 50

7 results • Page 1 of 1

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Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k

I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…

Answer: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k

The behavior you have documented in not surprising and is explained in the featureCounts documentation. The first thing to understand is t…

Answer: Feature Counts -R XS Read Assignment Tag by Gordon Smyth 52k

No, featureCounts cannot change the XS tag to a different tag, because that would change the information in the output. featureCounts needs…

Comment: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Thanks! This one might be worth remaking with `ComplexHeatmap`. Similar to https://github.com/LieberInstitute/spatialLIBD/pull/91 that was …

Comment: DESeq2 - Comparing Comparisons by James W. MacDonald 67k

Full disclosure: I don't use `DESeq2`, and find the contrasts specification confusing. Because of that, I generally recommend using `result…

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Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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