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2.5k

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DESeq2 PlotCounts

2.0 years ago annamariabugaj ▴ 10

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2.7k

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DESeq2 plotCounts vst

updated 2.3 years ago by Michael Love 43k • written 2.3 years ago by Laia ▴ 10

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DESeq2 plotCounts

updated 3.8 years ago by Michael Love 43k • written 3.8 years ago by elizabethe819 • 0

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1.2k

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deseq2 plotcounts

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by sunthomas • 0

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1.7k

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deseq2 plotCounts pvalues RNAseq

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by anne.hoffrichter • 0

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2.4k

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R deseq2 plotcounts

5.8 years ago ecg1g15 ▴ 30

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deseq2 plotCounts rowRanges

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by I.Castanho ▴ 50

7 results • Page 1 of 1

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Answer: cameraPR() non directional test by Hugo Varet ▴ 80

Dear Gordon, thank you for your answer, that's exactly what I wanted to know. Happy to see you'll make it available in the next version o…

Answer: DEseq2 design for additive treatment by ATpoint ★ 4.7k

See https://support.bioconductor.org/p/69104/#69197, https://support.bioconductor.org/p/129755/ for testing against an average. Many other …

Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…

Answer: cameraPR() non directional test by Gordon Smyth 52k

Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …

Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

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Answer: DEseq2 design for additive treatment

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

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