Bioconductor PlotPCA

Showing : plotPCA • reset

votes

replies

901

views

Rstudio plotPCA DESeq2

14 months ago yee • 0

vote

replies

1.1k

views

plotMA ggplot2 plotPCA DESeq2

updated 16 months ago by Michael Love 43k • written 16 months ago by sara.jacobson • 0

votes

replies

5.2k

views

plotPCA PCA

updated 22 months ago by hediatnani • 0 • written 22 months ago by Yijing • 0

votes

replies

3.2k

views

DESeq2 plotPCA

updated 8 months ago by Daniele • 0 • written 3.0 years ago by synat.keam • 0

votes

replies

9.0k

views

plotpca DESeq2

3.1 years ago bjen731 ▴ 10

votes

replies

1.7k

views

plotPCA DESeq2 RUVSeq removebatcheffect()

3.8 years ago elizabethe819 • 0

vote

1.1k

views

DESeq2 RNASeq plotpca

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by s1760083 • 0

votes

replies

1.3k

views

deseq2 biplot plotpca

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by ecg1g15 ▴ 30

votes

810

views

deseq2 PlotPCA draw.triple.venn

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by N. Perera • 0

votes

810

views

deseq2 plotpca

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by snp31 • 0

votes

8.0k

views

deseq2 plotpca PCa

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by lirongrossmann ▴ 80

votes

replies

3.7k

views

deseq2 rlog variancestabilizingtransformation plotpca pca

7.4 years ago lirongrossmann ▴ 80

votes

replies

3.5k

views

DESeq2 plotPCA rlog transformation vsd

7.5 years ago Jane Merlevede ▴ 90

votes

replies

46k

views

plotPCA deseq2 labels

updated 8.1 years ago by Federico Marini ▴ 180 • written 8.1 years ago by al-ash ▴ 50

votes

replies

1.1k

views

pca plotpca

8.3 years ago marianarochadesouza • 0

votes

replies

1.8k

views

deseq2 plotPCA PCA rna-seq

8.7 years ago newsomew13 • 0

16 results • Page 1 of 1

Recent ...

Replies

Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by a.alkema • 0

Oh, that's silly - thanks, will do!

Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by James W. MacDonald 67k

This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…

Comment: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by franknappi14 • 0

I tried it and it's working properly.

Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by ATpoint ★ 4.6k

The vignette covers batch effects as per the authors best practice, please read it and consider following it.

Votes

Comment: Unused arguments error without used arguments in GSVA?

Answer: Reducing and aggregating GRanges with gaps using plyranges

Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

Awards • All

Scholar to Michael Love 43k

Popular Question to Malcolm Cook ★ 1.6k