Bioconductor PlotPCA

Showing : plotPCA • reset

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753

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Rstudio plotPCA DESeq2

11 months ago yee • 0

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992

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plotMA ggplot2 plotPCA DESeq2

updated 13 months ago by Michael Love 42k • written 13 months ago by sara.jacobson • 0

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plotPCA PCA

updated 19 months ago by hediatnani • 0 • written 19 months ago by Yijing • 0

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DESeq2 plotPCA

updated 5 months ago by Daniele • 0 • written 2.8 years ago by synat.keam • 0

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plotpca DESeq2

2.8 years ago bjen731 ▴ 10

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1.6k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.5 years ago elizabethe819 • 0

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DESeq2 RNASeq plotpca

updated 3.8 years ago by Michael Love 42k • written 3.8 years ago by s1760083 • 0

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1.3k

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deseq2 biplot plotpca

updated 4.8 years ago by Michael Love 42k • written 4.8 years ago by ecg1g15 ▴ 30

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775

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deseq2 PlotPCA draw.triple.venn

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by N. Perera • 0

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748

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deseq2 plotpca

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by lirongrossmann ▴ 80

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3.6k

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deseq2 rlog variancestabilizingtransformation plotpca pca

7.1 years ago lirongrossmann ▴ 80

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DESeq2 plotPCA rlog transformation vsd

7.3 years ago Jane Merlevede ▴ 90

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45k

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plotPCA deseq2 labels

updated 7.8 years ago by Federico Marini ▴ 180 • written 7.8 years ago by al-ash ▴ 50

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pca plotpca

8.1 years ago marianarochadesouza • 0

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deseq2 plotPCA PCA rna-seq

8.5 years ago newsomew13 • 0

16 results • Page 1 of 1

Recent ...

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

Votes

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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