Bioconductor PlotPCA

Showing : plotPCA • reset

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958

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Rstudio plotPCA DESeq2

15 months ago yee • 0

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1.2k

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plotMA ggplot2 plotPCA DESeq2

updated 17 months ago by Michael Love 43k • written 17 months ago by sara.jacobson • 0

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5.5k

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plotPCA PCA

updated 23 months ago by hediatnani • 0 • written 24 months ago by Yijing • 0

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3.3k

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DESeq2 plotPCA

updated 9 months ago by Daniele • 0 • written 3.1 years ago by synat.keam • 0

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plotpca DESeq2

3.2 years ago bjen731 ▴ 10

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1.8k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.9 years ago elizabethe819 • 0

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1.2k

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DESeq2 RNASeq plotpca

updated 4.1 years ago by Michael Love 43k • written 4.1 years ago by s1760083 • 0

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1.4k

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deseq2 biplot plotpca

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by ecg1g15 ▴ 30

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824

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deseq2 PlotPCA draw.triple.venn

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by N. Perera • 0

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844

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deseq2 plotpca

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by snp31 • 0

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8.1k

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deseq2 plotpca PCa

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by lirongrossmann ▴ 80

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3.8k

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deseq2 rlog variancestabilizingtransformation plotpca pca

7.5 years ago lirongrossmann ▴ 80

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3.5k

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DESeq2 plotPCA rlog transformation vsd

7.6 years ago Jane Merlevede ▴ 90

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47k

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plotPCA deseq2 labels

updated 8.2 years ago by Federico Marini ▴ 180 • written 8.2 years ago by al-ash ▴ 50

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pca plotpca

8.4 years ago marianarochadesouza • 0

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1.8k

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deseq2 plotPCA PCA rna-seq

8.8 years ago newsomew13 • 0

16 results • Page 1 of 1

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Comment: error in ChAMP loading file by shocked.tick.zyet • 0

Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…

Comment: orgDB by jenniferping36 • 0

Thanks for the suggestion! I'll check out the resources.

Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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