Bioconductor PlotMA

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992

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plotMA ggplot2 plotPCA DESeq2

updated 13 months ago by Michael Love 42k • written 13 months ago by sara.jacobson • 0

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748

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matrixsubset DESeq2 plotMA

updated 3.6 years ago by Michael Love 42k • written 3.6 years ago by l.troxler ▴ 10

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1.0k

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deseq2 plotMA rnaseq community analysis asymmetry

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by chaco001 • 0

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1.1k

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agilent single channel plotMA background correction

updated 6.4 years ago by Gordon Smyth 51k • written 6.4 years ago by CantExitVIM ▴ 10

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1.2k

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deseq2 plotMA rnaseq logfoldchange

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by ap_vc21 • 0

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3.1k

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deseq2 plotma

7.1 years ago Yvan Wenger ▴ 50

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5.1k

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rstudio r plotMA

7.4 years ago g.k • 0

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5.0k

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deseq2 rnaseq plotMA deseq rna-seq

updated 8.6 years ago by Michael Love 42k • written 8.6 years ago by sjs0282 • 0

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4.0k

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limma plotMA

updated 9.2 years ago by Gordon Smyth 51k • written 9.2 years ago by Lisa Cohen ▴ 50

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2.6k

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normalization deseq2 plotMA meanSDplot

9.2 years ago aravenscraft • 0

10 results • Page 1 of 1

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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