Bioconductor PlotMA

Showing : plotMA • reset

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739

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plotMA ggplot2 plotPCA DESeq2

updated 9 months ago by Michael Love 42k • written 9 months ago by sara.jacobson • 0

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657

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matrixsubset DESeq2 plotMA

updated 3.2 years ago by Michael Love 42k • written 3.2 years ago by l.troxler ▴ 10

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933

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deseq2 plotMA rnaseq community analysis asymmetry

updated 4.3 years ago by Michael Love 42k • written 4.4 years ago by chaco001 • 0

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994

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agilent single channel plotMA background correction

updated 6.1 years ago by Gordon Smyth 51k • written 6.1 years ago by CantExitVIM ▴ 10

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1.1k

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deseq2 plotMA rnaseq logfoldchange

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by ap_vc21 • 0

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2.8k

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deseq2 plotma

6.8 years ago Yvan Wenger ▴ 50

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5.0k

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rstudio r plotMA

7.1 years ago g.k • 0

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4.9k

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deseq2 rnaseq plotMA deseq rna-seq

updated 8.3 years ago by Michael Love 42k • written 8.3 years ago by sjs0282 • 0

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3.8k

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limma plotMA

updated 8.9 years ago by Gordon Smyth 51k • written 8.9 years ago by Lisa Cohen ▴ 50

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2.5k

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normalization deseq2 plotMA meanSDplot

8.9 years ago aravenscraft • 0

10 results • Page 1 of 1

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Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0

Thank you all, I solved my issue by creating a for loop. Cheers!

Comment: Ranking the GSEA Results by alserg ▴ 260

Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself

Comment: Ranking the GSEA Results by alserg ▴ 260

Where did you see ranking of genes by log2FC * (-log10 p-value)? I don't think I ever saw one and not sure what it should achieve. Aren't y…

Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k

No, this is a contrast of estimated coefficient (e.g. the Wald test).

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Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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