Bioconductor PlotCounts

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DESeq2 PlotCounts

23 months ago annamariabugaj ▴ 10

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DESeq2 plotCounts vst

updated 2.2 years ago by Michael Love 43k • written 2.2 years ago by Laia ▴ 10

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DESeq2 plotCounts

updated 3.7 years ago by Michael Love 43k • written 3.7 years ago by elizabethe819 • 0

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deseq2 plotcounts

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by sunthomas • 0

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deseq2 plotCounts pvalues RNAseq

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by anne.hoffrichter • 0

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R deseq2 plotcounts

5.7 years ago ecg1g15 ▴ 30

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deseq2 plotCounts rowRanges

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by I.Castanho ▴ 50

7 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280

`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…

Answer: affymetrix by James W. MacDonald 67k

When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…

Answer: Problems with GSEA by Guido Hooiveld ★ 4.1k

The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …

Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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