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Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Thili
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0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load
by
andrew.gibbons
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0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: ESTMATE, MCPcounter, EPIC, xCell input
by
Kang
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0
These are not, as far as I know, bioconductor packages.
You should query on the websites for those specific software programs.
@[mapquest][…
Comment: Robust way of dealing with low number of samples for Differential Gene Expressio
by
Kang
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0
I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
GV Yoshikawa
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0
Thank you for the reply. I tried swapping columns before asking, it made no difference.
head(keggframeData)
path_id kegg…
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