Bioconductor Pileup

Showing : pileup • reset

votes

replies

703

views

Pysam pileup Rsamtools RNASeq

16 months ago Xinqi • 0

votes

replies

554

views

Rsamtools pileup

19 months ago romain.lannes • 0

votes

replies

667

views

Rsamtools pileup

22 months ago alexandr.gopanenko ▴ 50

votes

replies

677

views

Rsamtools pileup

2.0 years ago JoeMG • 0

votes

replies

959

views

Rsamtools pileup insertion deletion

4.5 years ago madsheilskov ▴ 10

vote

replies

2.8k

views

Rsamtools pileup number of reads

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by mgray ▴ 10

votes

replies

1.2k

views

pileup rsamtools

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by Jeremy Leipzig ▴ 70

votes

replies

1.5k

views

rsamtools pileup

8.4 years ago oscar puig • 0

votes

1.2k

views

Rsamtools GAlignments pileup

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by jesper.gadin ▴ 10

vote

replies

2.8k

views

rsamtools pileup

8.8 years ago TimothéeFlutre ▴ 80

votes

replies

1.7k

views

rsamtools pileup

9.0 years ago komal.rathi ▴ 120

votes

replies

2.8k

views

pileup rsamtools bam genomicalignments

updated 9.7 years ago by Nathaniel Hayden ▴ 180 • written 9.7 years ago by Sam Buckberry • 0

12 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

Awards • All