Bioconductor Picksoftthreshold

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wgcna picksoftthreshold scale-free topology co-expression network

6.7 years ago marcantoine.guery • 0

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wgcna picksoftthreshold

6.8 years ago aditi ▴ 20

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wgcna sft picksoftthreshold threshold rnaseq

updated 7.0 years ago by Peter Langfelder ★ 3.0k • written 7.0 years ago by Fabricio Almeida-Silva ▴ 40

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rnaseq wgcna picksoftthreshold

updated 8.2 years ago by Lluís Revilla Sancho ▴ 760 • written 8.2 years ago by divara01 • 0

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WGCNA pickSoftThreshold power RNA-Seq

updated 8.9 years ago by Peter Langfelder ★ 3.0k • written 8.9 years ago by mrodrigues.fernanda ▴ 10

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Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0

So I changed it to ~0 + group (with the same plot), but I still don't know if it's good or what to fix if not.

Answer: Newbie Question - adding metadata to an analysis by James W. MacDonald 67k

See [Section 4][1]. But do note that you do not need for the `phenoData` slot to contain the data. You can simply have a 'targets' data.fra…

Comment: Want numbers in DESeq to be seen as numerical, not categorical by swbarnes2 ★ 1.4k

How did you import the data? Did you accidently leave in `stringAsFactors=True`? But I'm not entirely sure that you don't want that to be…

Comment: MissMethyl failed to use gometh function for EPICv2 by James W. MacDonald 67k

By version 1.38.0, I mean version 1.38.0 of `MissMethyl`.

Answer: MissMethyl failed to use gometh function for EPICv2 by James W. MacDonald 67k

You need to [upgrade to the release version of Bioconductor][1]. You have version 1.38.0 installed which indicates that you are using the p…

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Comment: How do I fix an odd voom plot in a combined dataset?

Comment: Theoretical WGCNA Question

Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a

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Scholar to Michael Love 43k