Showing : pickSoftThreshold • reset
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Drop of soft-threshold curve with high power values
wgcna picksoftthreshold scale-free topology co-expression network
6.6 years ago marcantoine.guery • 0
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'Error in summary(lm1)$coefficients[2, 1] : subscript out of bounds' while running pickSoftThreshold in WGCNA
wgcna picksoftthreshold
6.7 years ago aditi ▴ 20
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WGCNA - Choosing the best threshold
wgcna sft picksoftthreshold threshold rnaseq
updated 6.8 years ago by ★ 3.0k • written 6.8 years ago by ▴ 40
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Unable to get soft threshold power using WGCNA for RNA-seq data
rnaseq wgcna picksoftthreshold
updated 8.1 years ago by ▴ 760 • written 8.1 years ago by • 0
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WGCNA - problems picking a suitable power
WGCNA pickSoftThreshold power RNA-Seq
updated 8.8 years ago by ★ 3.0k • written 8.8 years ago by ▴ 10
5 results • Page 1 of 1
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Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.
Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k
Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.
Comment: Differential Expression Genes as Independent Variables by abadgerw • 0
The data that is repeated is a quantitative metric of post-mortem pathology across multiple sections. Not all patients have the same number…
Answer: Crossover design with limma by Gordon Smyth 52k
Your experiment is somewhat more elaborate than a classical crossover design because of the period-specific baseline controls. The analyses…
Answer: Differential Expression Genes as Independent Variables by Gordon Smyth 52k
Sorry, your question doesn't make sense to me. There are tens of thousands of genes and you can't run a mixed model analysis with one depen…
Votes
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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