Bioconductor Phenotype extraction

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microarry affymetrix microarrays phenotype extraction

updated 6.8 years ago by Axel Klenk ★ 1.1k • written 6.8 years ago by paul.elliot1994 • 0

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.cel phenotype extraction

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by nia ▴ 30

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reseach phenotype extraction biomedical ontologies Job

10.5 years ago Doe, Aimee ▴ 40

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Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Comment: DESeq2 Design controlling for gender by donnycrimson • 0

On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0

Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …

Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0

There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…

Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

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A: Understanding contrasts limma

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