Bioconductor Phastcons

Showing : phastcons • reset

5

votes

9

replies

4.4k

views

ATACseqQC bsgenome phastcons rtracklayer

updated 7.7 years ago by Ou, Jianhong ★ 1.3k • written 7.7 years ago by crysis405 ▴ 10

5

votes

5

replies

1.9k

views

phastcons

updated 9.7 years ago by Robert Castelo ★ 3.4k • written 10.1 years ago by Diego Diez ▴ 760

1

vote

1

reply

1.5k

views

variantfiltering phastcons

updated 9.7 years ago by Robert Castelo ★ 3.4k • written 9.8 years ago by Stefanie Tauber ▴ 40

4

votes

4

replies

2.1k

views

phastcons

10.2 years ago Brian Smith ▴ 120

4 results • Page 1 of 1

Recent ...

Replies

Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene by Michael Love 43k

See swish vignette, these are explained.

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

Awards • All