Bioconductor Pcaexplorer

Showing : pcaexplorer • reset

votes

replies

1.3k

views

DESeq2 pcaExplorer

updated 5 months ago by BioinfGuru ▴ 70 • written 6 months ago by Eric Katagirya • 0

votes

replies

1.1k

views

DESeq2 RNASeq PrincipalComponent pcaExplorer

written 2.0 years ago by James • 0

votes

replies

1.6k

views

PCAtools pcaExplorer pcaMethods

updated 2.4 years ago by Federico Marini ▴ 180 • written 2.4 years ago by m610110001 • 0

votes

replies

3.3k

views

PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.6 years ago Alan • 0

votes

replies

2.4k

views

GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser

updated 2.8 years ago by Federico Marini ▴ 180 • written 2.8 years ago by chase.mateusiak • 0

votes

replies

33k

views

DESeq2 pcaExplorer

updated 3.7 years ago by Michael Love 43k • written 3.7 years ago by vanbelj ▴ 30

votes

replies

1.9k

views

EDA pcaExplorer PCAtools PCA

updated 2.9 years ago by Miguel ▴ 20 • written 4.3 years ago by k.vitting.seerup ▴ 120

votes

replies

2.2k

views

annotation go pcaExplorer AnnotationForge

updated 5.7 years ago by James W. MacDonald 67k • written 5.7 years ago by psutton • 0

votes

1.3k

views

pcaexplorer genespca deseq2

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by sally_b86 • 0

votes

replies

2.5k

views

pca2go pcaexplorer

updated 7.2 years ago by Federico Marini ▴ 180 • written 7.3 years ago by reubenmcgregor88 • 0

vote

replies

1.5k

views

deseq2 pcaexplorer

7.3 years ago reubenmcgregor88 • 0

vote

replies

1.7k

views

pcaExplorer pca

updated 8.0 years ago by Federico Marini ▴ 180 • written 8.0 years ago by swaegers.janne • 0

12 results • Page 1 of 1

Recent ...

Replies

Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k

Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…

Votes

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Awards • All