Bioconductor PcaMethods

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pcaMethods pca

updated 10 months ago by James W. MacDonald 67k • written 10 months ago by yousavdj • 0

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pcaMethods

10 months ago yousavdj • 0

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PCAtools pcaExplorer pcaMethods

updated 2.5 years ago by Federico Marini ▴ 180 • written 2.5 years ago by m610110001 • 0

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OutlierD pcaMethods MicroarrayData Microarray

3.7 years ago waiyin0923 • 0

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pcaMethods

3.7 years ago Gero • 0

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pcaMethods

3.9 years ago k.vitting.seerup ▴ 120

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pcamethods

updated 6.2 years ago by James W. MacDonald 67k • written 6.2 years ago by johnnytam100 • 0

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pcamethods missing data

7.7 years ago eli-sava • 0

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pcamethods

updated 7.8 years ago by James W. MacDonald 67k • written 7.8 years ago by allantanaka11 • 0

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metaboliteData pcaMethods pcamethods r package metabolite Data

updated 8.0 years ago by Valerie Obenchain ★ 6.8k • written 8.0 years ago by lukasz.galecki ▴ 10

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pcamethods r

8.7 years ago stolarek.ir • 0

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pcaMethods pcaMethods

10.8 years ago Julian Gehring ★ 1.3k

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pcaMethods pcaMethods

10.8 years ago Guest User ★ 13k

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pcaMethods pcaMethods

13.7 years ago Alfons Gonzalez ▴ 10

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pcaMethods pcaMethods

13.9 years ago Manca Marco PATH ▴ 340

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Clustering pcaMethods Clustering pcaMethods

14.6 years ago avinash gupta ▴ 130

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pcaMethods pcaMethods

updated 16.0 years ago by Wolfgang Huber ★ 13k • written 16.0 years ago by Yury Bukhman ▴ 20

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aroma.light pcaMethods aroma.light pcaMethods

updated 16.2 years ago by Sean Davis 21k • written 16.2 years ago by Tillinghast, Guy, M.D. ▴ 30

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impute pcaMethods impute pcaMethods

17.2 years ago De-Jian ZHAO ▴ 240

19 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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