Showing : pca plot • reset
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How to create better separation in PCA plot
PCA plot RNAseq
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 10
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PCA analysis in R for 780 genes in 20 samples.
pca plot pca scree plot pca2go
updated 6.6 years ago by ★ 13k • written 6.6 years ago by • 0
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pcaGoPromoter PCA plot in R: issue with EntrezID conversion
pca pca plot pcagopromoter
updated 7.7 years ago by 67k • written 7.7 years ago by ▴ 10
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PCA plot in DESeq2
deseq2 pca plot
updated 7.9 years ago by 42k • written 7.9 years ago by ▴ 10
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10
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Problem reproducing PCA plot in DeSeq2 totuorial
DeSeq2 PCA plot
7.9 years ago sarahmacdonald86 • 0
5 results • Page 1 of 1
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error by James W. MacDonald 67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
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A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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