Bioconductor Package updates

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unable to update packages: foreign package updates

6.3 years ago shreyoshi.2311 • 0

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release bioconductor packages package updates News

6.7 years ago shepherl 4.1k

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package updates deprecate release News

6.8 years ago shepherl 4.1k

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package updates deprecate News

6.8 years ago shepherl 4.1k

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package updates deprecate News

7.0 years ago shepherl 4.1k

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deprecate news package updates News

7.1 years ago shepherl 4.1k

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bioconductor biocgenerics ubuntu package updates r update

7.1 years ago siinemselvi • 0

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github package updates developers package development

7.3 years ago rtraborn • 0

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package updates

7.4 years ago gctromp ▴ 10

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qvalue library software error package installation package updates

8.1 years ago tah340 • 0

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rmarkdown package updates

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by tarek.mohamed ▴ 10

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package submit package package updates

8.6 years ago francescodc87 • 0

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bioclite package installation package updates

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by jacorvar ▴ 40

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package updates error

updated 9.4 years ago by Dan Tenenbaum ★ 8.2k • written 9.4 years ago by sircoulombf • 0

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bioclite package updates

updated 9.6 years ago by Dan Tenenbaum ★ 8.2k • written 9.6 years ago by carol white ▴ 680

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package updates

9.6 years ago Cataphractus • 0

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package updates codetools deseq mgcv

updated 9.7 years ago by rodrigo_sengo • 0 • written 9.8 years ago by pbhamidipati • 0

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bioclite package updates

updated 9.8 years ago by Dan Tenenbaum ★ 8.2k • written 9.8 years ago by Jenny Drnevich ★ 2.0k

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rmysql R version 3.1.2 3.1.2 package updates

10.1 years ago milorobertsmith • 0

19 results • Page 1 of 1

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

Sorry, I cannot follow what you're saying. The two code sequences you show look to be exactly the same.

Answer: Mean variance curve troubleshoot filtering by Gordon Smyth 52k

You could use `filterByExpr()`, as recommended by Law et al (2018) and in the limma and edgeR case studies. However, the main problem wi…

Comment: How do I fix an odd voom plot in a combined dataset? by Gordon Smyth 52k

The fact that you have partial NA coefficients indicates that your merged dataset consists in good part of NAs for a very large number of g…

Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0

Thanks for responding! I did change the code slightly: dge1 <- DGEList(counts = combined_data_counts) keep <- rowSums(cpm(dge1)…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

The estimateGLMRobustDisp() function seems to have an effect on glmQLFit(), even in edgeR 4 (4.4.1). If I use estimateGLMRobustDisp(), like…

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Answer: How do I fix an odd voom plot in a combined dataset?

Comment: How do I fix an odd voom plot in a combined dataset?

C: How does edgeR cpm function calculate log(CPM) values?

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