Bioconductor Pacalls

Showing : pacalls • reset

3

votes

1

reply

1.5k

views

microarray oligo gene ST pacalls

updated 7.8 years ago by James W. MacDonald 68k • written 7.8 years ago by Sophie Marion de Proce • 0

2

votes

1

reply

1.3k

views

oligo paCalls

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by colonppg ▴ 30

2 results • Page 1 of 1

Recent ...

Replies

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Votes

Answer: normalizatino of dna methylation EPIC data

Awards • All