Bioconductor Overlaps

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GenomicRanges overlaps intersect

updated 5.9 years ago by Michael Lawrence ★ 11k • written 5.9 years ago by fjia304 • 0

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Answer: Diffbind interpretation of data - fold change by James W. MacDonald 67k

It's log fold change, and what you get from `dba.report` should have the same values (part of `dba.plotVolcano` includes running the report…

Comment: DESEQ2 Default Value for Cooks Distance cutoff by Vitor • 0

Dear Michael, how can I use 0.95 quantile to be more stringent?

Answer: Considerations behind the choice of RNAseq Differential Expression Analysis Tool by Michael Love 43k

We recommend fishpond's swish method for isoform-level DE analysis as it takes into account inferential uncertainty that is present when yo…

Answer: No preprocessing allowed for EPICv2 with DMRcate by James W. MacDonald 67k

Have you read the [vignette that describes how to process the EPICv2 arrays][1]? Also the [NEWS file that tells you what changes have been …

Comment: How do I fix an odd voom plot in a combined dataset? by James W. MacDonald 67k

It looks more as you might expect, although it doesn't appear that you are filtering many of the low expressing genes out. Normally you sho…

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Comment: Theoretical WGCNA Question

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Popular Question to Levi Waldron ★ 1.1k

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