updated 2.8 years ago by
pengmin.wang.1
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written 5.6 years ago by
yangxiujujuju
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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
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I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
Answer: Origin of the labels for the SingleCellMultiModal dataset
by
ATpoint
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4.8k
If you check the underlying code a bit you find that there is a file with data sources:
```r
modes_file <- system.file("extdata", "metadat…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
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4.8k
That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…
Answer: Having Trouble Using CNE12() and CNE21() in CNEr
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1324087964
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0
![enter image description here][1]
[1]: /media/images/d1a91557-b19e-4fbf-b5a1-c4fd42b9
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
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0
Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…
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