Bioconductor Opencyto gating

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gating opencyto gating

7.5 years ago justinyi10 ▴ 10

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opencyto gating

7.5 years ago justinyi10 ▴ 10

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opencyto gating

7.5 years ago justinyi10 ▴ 10

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opencyto gating gating bioconductor

7.5 years ago justinyi10 ▴ 10

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opencyto gating

7.5 years ago justinyi10 ▴ 10

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opencyto gating

7.5 years ago justinyi10 ▴ 10

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opencyto gating bioconductor

7.5 years ago justinyi10 ▴ 10

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data.table opencyto gating csv files R

7.6 years ago Rivka • 0

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flowcore opencyto gating flowset

updated 7.9 years ago by Jiang, Mike ★ 1.3k • written 7.9 years ago by jordan.xanthopoulos • 0

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opencyto bioconductor opencyto gating

updated 8.0 years ago by Jiang, Mike ★ 1.3k • written 8.0 years ago by Rivka • 0

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opencyto gating opencyto flowcore flowworkspace

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by anara92 • 0

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opencyto gating flowcore flow cytometry

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by Ulrik Stervbo ▴ 30

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opencyto gating flowworkspace

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by Ulrik Stervbo ▴ 30

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opencyto gating

8.7 years ago Ulrik Stervbo ▴ 30

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flowclust opencyto opencyto gating

updated 9.1 years ago by Greg Finak ▴ 240 • written 9.2 years ago by Viktor Thiel • 0

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opencyto gating

updated 9.2 years ago by Jiang, Mike ★ 1.3k • written 9.2 years ago by veronikag • 0

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opencyto opencyto gating FlowJo

updated 10.0 years ago by Greg Finak ▴ 150 • written 10.0 years ago by juancamilos ▴ 10

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openCyto gating

10.3 years ago thomas.mohr ▴ 20

18 results • Page 1 of 1

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

They provide the code they used for DGE analysis in a gitlab link that can be found in the paper. In there you can find: ```` # estimate d…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Votes

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

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