Showing : openCyto • reset
0
votes
0
replies
331
views
OpenCyto polyFunctions
openCyto
11 months ago Albert • 0
0
votes
0
replies
596
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
20 months ago Dennis.hinkel • 0
1
vote
1
reply
689
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 20 months ago by ★ 3.9k • written 20 months ago by • 0
0
votes
0
replies
501
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
20 months ago Noël • 0
0
votes
0
replies
493
views
openCyto 2.8.0: error in prior_flowclust
prior_flowclust openCyto
2.1 years ago martin.andres • 0
0
votes
2
replies
711
views
openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto register_plugins gs_add_gating_method
4.1 years ago geoffreylewen • 0
0
votes
1
reply
727
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.2 years ago by ▴ 310 • written 4.3 years ago by • 0
7
votes
3
replies
1.4k
views
Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add quadGate openCyto
updated 4.2 years ago by ▴ 310 • written 4.2 years ago by ▴ 30
4
votes
5
replies
1.2k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.2 years ago by ▴ 310 • written 4.2 years ago by • 0
1
vote
5
replies
1.5k
views
custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto registerPlugin gatingMethod minDensity
4.9 years ago k.teijgeler • 0
5
votes
11
replies
2.0k
views
polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsGate
updated 5.1 years ago by ★ 1.3k • written 5.1 years ago by • 0
0
votes
6
replies
1.6k
views
How to select left hand side of mindensity2 gate
openCyto mindensity
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by ▴ 20
0
votes
7
replies
1.5k
views
RefGate populations switched in OpenCyto 1.20
RefGate OpenCyto
updated 5.4 years ago by ★ 1.3k • written 5.5 years ago by • 0
3
votes
3
replies
1.8k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 5.8 years ago by ★ 1.3k • written 6.7 years ago by ▴ 10
0
votes
4
replies
2.8k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 6.4 years ago by ★ 1.3k • written 6.8 years ago by ▴ 70
0
votes
6
replies
1.8k
views
opencyto Error in .validity_check_alias
opencyto
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by ▴ 20
2
votes
5
replies
1.9k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace opencyto
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by ▴ 10
1
vote
5
replies
2.0k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by ▴ 10
0
votes
1
reply
908
views
Fail to load openCyto
opencyto bioconductor
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 10
0
votes
1
reply
2.6k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto fatal error library
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by • 0
1
vote
1
reply
1.3k
views
Add flowclust gate to gatingset
opencyto flowclust
updated 7.1 years ago by ★ 1.3k • written 7.1 years ago by ▴ 20
2
votes
1
reply
1.1k
views
openCyto displaying gating panels
opencyto
updated 7.5 years ago by ★ 1.3k • written 7.5 years ago by • 0
2
votes
1
reply
1.1k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto bioconductor opencyto gating
updated 7.5 years ago by ★ 1.3k • written 7.5 years ago by • 0
2
votes
4
replies
1.4k
views
Parsing flowWorkspace data
opencyto R flowworkspace bioconductor
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by • 0
1
vote
4
replies
1.6k
views
openCyto trouble importing xml file
opencyto bioconductor R
7.6 years ago Rivka • 0
0
votes
1
reply
1.3k
views
using flowIncubator package's function
opencyto flow cytometry R package installation
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
1
vote
5
replies
1.9k
views
openCyto - flowclust.2d throws errors
opencyto flow cytometry
updated 8.2 years ago by • 0 • written 8.2 years ago by ▴ 30
0
votes
1
reply
2.2k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
updated 8.2 years ago by ★ 1.3k • written 8.2 years ago by • 0
1
vote
3
replies
1.4k
views
OpenCyto - getting gate coordinates
opencyto
8.2 years ago Ulrik Stervbo ▴ 30
2
votes
1
reply
1.7k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace opencyto
updated 8.3 years ago by ▴ 10 • written 8.3 years ago by ▴ 10
0
votes
1
reply
1.9k
views
FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.3 years ago Jiang, Mike ★ 1.3k
1
vote
2
replies
1.2k
views
openCyto - samples with low cell counts
flowcytometry opencyto
8.5 years ago Jiang, Mike ★ 1.3k
0
votes
3
replies
2.0k
views
openCyto: compilation failure during installation
opencyto rhdf5 compilation error
8.5 years ago gmirkin • 0
1
vote
9
replies
3.3k
views
Problem with ggcyto/flowWorkspace from GitHub
software error flowworkspace opencyto
8.5 years ago anders.tondell ▴ 30
4
votes
8
replies
2.9k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust opencyto opencyto gating
updated 8.6 years ago by ▴ 240 • written 8.7 years ago by • 0
0
votes
5
replies
2.0k
views
openCyto fails to load
opencyto bioclite
updated 8.7 years ago by • 0 • written 8.7 years ago by ▴ 20
0
votes
4
replies
1.6k
views
Issues parsing workspace in openCyto
opencyto
9.0 years ago JK ▴ 10
0
votes
0
replies
1.4k
views
openCyto transitional gate
flow cytometry opencyto
9.2 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.4k
views
Re: FlowStats help
flowclust opencyto flowcytometry
9.3 years ago Jiang, Mike ★ 1.3k
5
votes
4
replies
3.2k
views
openCyto: Using combination gates (boolean gates)
opencyto opencyto gating FlowJo
updated 9.5 years ago by ▴ 150 • written 9.5 years ago by ▴ 10
4
votes
1
reply
1.7k
views
News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
9.8 years ago Greg Finak ▴ 150
1
vote
0
replies
1.8k
views
Issue with flowDensity on OpenCyto
flowClust openCyto flowDensity flowClust openCyto flowDensity
9.9 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
1.5k
views
OpenCyto
Cancer eisa openCyto Cancer eisa openCyto
10.0 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
958
views
Bioconductor Digest, Vol 134, Issue 10
openCyto flowDensity openCyto flowDensity
10.2 years ago Jiang, Mike ★ 1.3k
44 results • Page 1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results by alserg ▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results by alserg ▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Awards • All
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to ATpoint ★ 4.2k
Popular Question to WouterDeCoster ▴ 130
Scholar to Gordon Smyth 51k
Voter to Chris ▴ 20
Locations • All
Germany, 4 minutes ago
Wageningen University, Wageningen, the Netherlands, 17 minutes ago
Novartis Institutes for BioMedical Research, 22 minutes ago
United States, 31 minutes ago
France, 39 minutes ago
Traffic: 1140 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6