Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
openCyto
•
reset
0
votes
0
replies
148
views
Deprecated Gates- tailgate
openCyto
5 weeks ago
ztflaten
• 0
0
votes
0
replies
439
views
OpenCyto polyFunctions
openCyto
15 months ago
Albert
• 0
0
votes
0
replies
691
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
24 months ago
Dennis.hinkel
• 0
1
vote
1
reply
875
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry
Opencyto
updated 2.0 years ago by
Kevin Blighe
★ 4.0k • written 2.0 years ago by
Noël
• 0
0
votes
0
replies
629
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto
FlowCytometry
2.0 years ago
Noël
• 0
0
votes
0
replies
582
views
openCyto 2.8.0: error in prior_flowclust
prior_flowclust
openCyto
2.4 years ago
martin.andres
• 0
0
votes
2
replies
819
views
openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto
register_plugins
gs_add_gating_method
4.4 years ago
geoffreylewen
• 0
0
votes
1
reply
845
views
FlowCore openCyto: problem with summary(result)
flowCore
openCyto
Summary
Result
Filter
updated 4.5 years ago by
Jake Wagner
▴ 310 • written 4.6 years ago by
noviello
• 0
7
votes
3
replies
1.6k
views
Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add
quadGate
openCyto
updated 4.5 years ago by
Jake Wagner
▴ 310 • written 4.5 years ago by
alavy
▴ 30
4
votes
5
replies
1.4k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace
flowCore
openCyto
flowFrame
F-measure
updated 4.6 years ago by
Jake Wagner
▴ 310 • written 4.6 years ago by
stefankolling+github
• 0
1
vote
5
replies
1.8k
views
custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto
registerPlugin
gatingMethod
minDensity
5.2 years ago
k.teijgeler
• 0
5
votes
11
replies
2.1k
views
polyFunctions gate in OpenCyto 1.20
opencyto
polyfunctions
polyfunctionsGate
updated 5.4 years ago by
Jiang, Mike
★ 1.3k • written 5.5 years ago by
k.teijgeler
• 0
0
votes
6
replies
1.8k
views
How to select left hand side of mindensity2 gate
openCyto
mindensity
updated 5.8 years ago by
Jiang, Mike
★ 1.3k • written 5.8 years ago by
biomiha
▴ 20
0
votes
7
replies
1.7k
views
RefGate populations switched in OpenCyto 1.20
RefGate
OpenCyto
updated 5.8 years ago by
Jiang, Mike
★ 1.3k • written 5.9 years ago by
k.teijgeler
• 0
3
votes
3
replies
2.0k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto
flowcore
flow cytometry
updated 6.1 years ago by
Jiang, Mike
★ 1.3k • written 7.1 years ago by
Andrew Box
▴ 10
0
votes
4
replies
2.9k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite
openCyto
package installation
updated 6.7 years ago by
Jiang, Mike
★ 1.3k • written 7.1 years ago by
Robert Baer
▴ 70
0
votes
6
replies
2.0k
views
opencyto Error in .validity_check_alias
opencyto
updated 7.1 years ago by
Jiang, Mike
★ 1.3k • written 7.1 years ago by
biomiha
▴ 20
2
votes
5
replies
2.1k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace
opencyto
updated 7.3 years ago by
Jiang, Mike
★ 1.3k • written 7.3 years ago by
justinyi10
▴ 10
1
vote
5
replies
2.2k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 7.3 years ago by
Jiang, Mike
★ 1.3k • written 7.3 years ago by
justinyi10
▴ 10
0
votes
1
reply
1.0k
views
Fail to load openCyto
opencyto
bioconductor
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
justinyi10
▴ 10
0
votes
1
reply
2.7k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto
fatal error
library
updated 7.4 years ago by
Jiang, Mike
★ 1.3k • written 7.4 years ago by
Maria
• 0
1
vote
1
reply
1.4k
views
Add flowclust gate to gatingset
opencyto
flowclust
updated 7.4 years ago by
Jiang, Mike
★ 1.3k • written 7.4 years ago by
pavitrarc
▴ 20
2
votes
1
reply
1.3k
views
openCyto displaying gating panels
opencyto
updated 7.8 years ago by
Jiang, Mike
★ 1.3k • written 7.8 years ago by
Rivka
• 0
2
votes
1
reply
1.2k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto
bioconductor
opencyto gating
updated 7.8 years ago by
Jiang, Mike
★ 1.3k • written 7.8 years ago by
Rivka
• 0
2
votes
4
replies
1.5k
views
Parsing flowWorkspace data
opencyto
R
flowworkspace
bioconductor
updated 7.9 years ago by
Jiang, Mike
★ 1.3k • written 7.9 years ago by
Rivka
• 0
1
vote
4
replies
1.7k
views
openCyto trouble importing xml file
opencyto
bioconductor
R
7.9 years ago
Rivka
• 0
0
votes
1
reply
1.4k
views
using flowIncubator package's function
opencyto
flow cytometry
R
package installation
updated 8.3 years ago by
Jiang, Mike
★ 1.3k • written 8.3 years ago by
anara92
• 0
1
vote
5
replies
2.0k
views
openCyto - flowclust.2d throws errors
opencyto
flow cytometry
updated 8.5 years ago by
bmuchmore
• 0 • written 8.5 years ago by
Ulrik Stervbo
▴ 30
0
votes
1
reply
2.4k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating
opencyto
flowcore
flowworkspace
updated 8.5 years ago by
Jiang, Mike
★ 1.3k • written 8.5 years ago by
anara92
• 0
1
vote
3
replies
1.6k
views
OpenCyto - getting gate coordinates
opencyto
8.5 years ago
Ulrik Stervbo
▴ 30
2
votes
1
reply
1.9k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace
opencyto
updated 8.6 years ago by
lovetatting
▴ 10 • written 8.6 years ago by
wir.traumen
▴ 10
0
votes
1
reply
2.0k
views
FlowWorkspace and norm2Filter
flowcytometry
opencyto
flowworkspace
flowcore
8.7 years ago
Jiang, Mike
★ 1.3k
1
vote
2
replies
1.4k
views
openCyto - samples with low cell counts
flowcytometry
opencyto
8.8 years ago
Jiang, Mike
★ 1.3k
0
votes
3
replies
2.2k
views
openCyto: compilation failure during installation
opencyto
rhdf5
compilation error
8.9 years ago • updated 8.8 years ago
gmirkin
• 0
1
vote
9
replies
3.5k
views
Problem with ggcyto/flowWorkspace from GitHub
software error
flowworkspace
opencyto
8.9 years ago • updated 8.8 years ago
anders.tondell
▴ 30
4
votes
8
replies
3.1k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust
opencyto
opencyto gating
updated 8.9 years ago by
Greg Finak
▴ 240 • written 9.0 years ago by
Viktor Thiel
• 0
0
votes
5
replies
2.2k
views
openCyto fails to load
opencyto
bioclite
updated 9.0 years ago by
yang.chen
• 0 • written 9.0 years ago by
pavitrarc
▴ 20
0
votes
4
replies
1.7k
views
Issues parsing workspace in openCyto
opencyto
9.3 years ago
JK
▴ 10
0
votes
0
replies
1.5k
views
openCyto transitional gate
flow cytometry
opencyto
9.6 years ago
Jiang, Mike
★ 1.3k
0
votes
0
replies
1.5k
views
Re: FlowStats help
flowclust
opencyto
flowcytometry
9.7 years ago
Jiang, Mike
★ 1.3k
5
votes
4
replies
3.4k
views
openCyto: Using combination gates (boolean gates)
opencyto
opencyto gating
FlowJo
updated 9.8 years ago by
Greg Finak
▴ 150 • written 9.8 years ago by
juancamilos
▴ 10
4
votes
1
reply
1.9k
views
News:
New Flow Cytometry Data Analysis Framework
flowcore
flowcytometry
opencyto
new
News
10.1 years ago
Greg Finak
▴ 150
1
vote
0
replies
1.9k
views
Issue with flowDensity on OpenCyto
flowClust
openCyto
flowDensity
flowClust
openCyto
flowDensity
10.2 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.6k
views
OpenCyto
Cancer
eisa
openCyto
Cancer
eisa
openCyto
10.4 years ago
Jiang, Mike
★ 1.3k
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 134, Issue 10
openCyto
flowDensity
openCyto
flowDensity
10.6 years ago
Jiang, Mike
★ 1.3k
45 results • Page
1 of 1
Recent ...
Replies
Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
by
Ai
• 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2
by
icecreamlover
• 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Awards
• All
Popular Question
to
Denise
• 0
Popular Question
to
Assa Yeroslaviz
★ 1.5k
Popular Question
to
Gordon Smyth
51k
Popular Question
to
john
• 0
Popular Question
to
James W. MacDonald
67k
Locations
• All
WEHI, Melbourne, Australia,
16 minutes ago
Germany,
22 minutes ago
Australia,
49 minutes ago
United States,
49 minutes ago
USA/Cold Spring Harbor Laboratory,
1 hour ago
Traffic: 619 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6