Showing : ontology • reset
4
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2
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3.4k
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Is there any description available for KEGG Pathway Edge Types
KEGG SystemsBiology KEGGgraph ontology
2.2 years ago Wuschel ▴ 10
1
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0
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1.0k
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adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
2.2 years ago Kevin Gregory ▴ 10
1
vote
2
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917
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gene ontologies for a set of genes
gene ontology
3.4 years ago Bogdan ▴ 670
1
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5
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1.6k
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Gene Ontology analysis
ontology edger limma ncbi organism package
updated 4.8 years ago by 52k • written 4.8 years ago by ▴ 20
3
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3
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1.5k
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Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 5.5 years ago by 67k • written 5.5 years ago by • 0
1
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1
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1.3k
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News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
6.2 years ago laurent.albou • 0
3
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3
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1.3k
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source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 6.3 years ago by • 0 • written 6.3 years ago by ▴ 10
7 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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