Showing : ontology • reset
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Is there any description available for KEGG Pathway Edge Types
KEGG SystemsBiology KEGGgraph ontology
2.3 years ago • updated 2.2 years ago Wuschel ▴ 10
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adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
2.3 years ago Kevin Gregory ▴ 10
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2
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936
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gene ontologies for a set of genes
gene ontology
3.5 years ago Bogdan ▴ 670
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Gene Ontology analysis
ontology edger limma ncbi organism package
updated 4.8 years ago by 52k • written 4.9 years ago by ▴ 20
3
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3
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1.5k
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Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 5.6 years ago by 67k • written 5.6 years ago by • 0
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News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
6.3 years ago laurent.albou • 0
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source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 6.4 years ago by • 0 • written 6.4 years ago by ▴ 10
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Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0
Michael, Thank you very much!
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k
Yes, with the knowledge that, it is expected to be underpowered.
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0
Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?
Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k
The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280
`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…
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