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Showing :
ontology
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reset
4
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2
replies
3.7k
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Is there any description available for KEGG Pathway Edge Types
KEGG
SystemsBiology
KEGGgraph
ontology
2.3 years ago
Wuschel
▴ 10
1
vote
0
replies
1.2k
views
adjusted p-values with topGO elim.KS method
topGO
Ontology
DifferentialExpression
2.4 years ago
Kevin Gregory
▴ 10
1
vote
2
replies
956
views
gene ontologies for a set of genes
gene
ontology
3.5 years ago
Bogdan
▴ 670
1
vote
5
replies
1.7k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 4.9 years ago by
Gordon Smyth
52k • written 4.9 years ago by
babak.loghmani
▴ 20
3
votes
3
replies
1.5k
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 5.6 years ago by
James W. MacDonald
68k • written 5.6 years ago by
t.bergmann
• 0
1
vote
1
reply
1.4k
views
News:
Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology
go
ontology
bioinformatics
genomics
News
6.4 years ago
laurent.albou
• 0
3
votes
3
replies
1.3k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO
ontology
GO.db
updated 6.4 years ago by
apkmirrorproject
• 0 • written 6.4 years ago by
marcinjoachimiak
▴ 10
7 results • Page
1 of 1
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Comment: DESeq2 It is correct to use interaction term for patient variability?
by
Bradley
• 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
Comment: Differential variance analysis - can i use deseq2
by
Michael Love
43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis
by
Gordon Smyth
52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA
by
pammelala304
• 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get()
by
Matthew Thornton
▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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