Bioconductor Offtarget analysis

Showing : offtarget analysis • reset

0

votes

0

replies

1.3k

views

offtarget analysis crisprseek

7.6 years ago susobhanbaidya • 0

0

votes

2

replies

1.2k

views

bioconductor crisprseek offtarget analysis

8.4 years ago Marie • 0

3

votes

2

replies

1.5k

views

crisprseek grna searching bsgenome forge offtarget analysis

updated 8.8 years ago by Hervé Pagès 16k • written 8.8 years ago by rajewski23 • 0

0

votes

2

replies

2.1k

views

CRISPRseek gRNA searching offtarget analysis NmCas9

9.8 years ago Julie Zhu ★ 4.3k

4 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for the quick reply. Rep 1 is lower than rep 2 in only one group (V_CD45), is this sufficient to affect the results even if I inc…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

One clearly sees spread in this gene but it seems largely explained by "rep", so some sort of batch effect that you are already accounting …

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you both for your reply and your time! Sorry I didn't include this earlier but here it is (for the gene of interest): structure(…

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Votes

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Awards • All