Bioconductor Normalized counts

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scran scater normalized counts

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Radek ▴ 90

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1.4k

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deseq2 normalized counts

updated 6.2 years ago by Steve Lianoglou ★ 13k • written 6.2 years ago by anaQ • 0

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1.6k

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normalized counts log2

6.4 years ago agdif ▴ 10

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8.3k

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rnaseq deseq2 normalized counts

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by JoannaF ▴ 10

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deseq2 normalization normalized counts

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by naets_matthias • 0

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1.8k

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edger batch effect normalized counts

updated 7.0 years ago by Ryan C. Thompson ★ 7.9k • written 7.0 years ago by Yahan • 0

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deseq2 cqn normalization normalized counts

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by mark.ebbert • 0

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normalized counts grch37 grch38 r bioconductor

7.3 years ago salvocomplicazioni1 • 0

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1.8k

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cn.mops log normalized counts table

updated 7.5 years ago by Günter Klambauer ▴ 540 • written 7.5 years ago by falk.zakrzewski • 0

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1.6k

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deseq2 counts normalized counts

updated 8.5 years ago by Steve Lianoglou ★ 13k • written 8.5 years ago by snamjoshi87 ▴ 40

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2.1k

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shrna edger deseq2 differential expression normalized counts

8.5 years ago Jane Merlevede ▴ 90

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3.1k

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diffbind normalized counts

8.6 years ago GFM ▴ 20

12 results • Page 1 of 1

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Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0

how you did it pls explain

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k

If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…

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A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =

Comment: Unused arguments error without used arguments in GSVA?

Awards • All

Scholar to James W. MacDonald 68k