Bioconductor Normalized counts

Showing : normalized counts • reset

vote

replies

1.4k

views

scran scater normalized counts

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by Radek ▴ 90

votes

replies

1.4k

views

deseq2 normalized counts

updated 6.4 years ago by Steve Lianoglou ★ 13k • written 6.4 years ago by anaQ • 0

votes

replies

1.6k

views

normalized counts log2

6.6 years ago agdif ▴ 10

votes

replies

8.4k

views

rnaseq deseq2 normalized counts

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by JoannaF ▴ 10

votes

replies

5.7k

views

deseq2 normalization normalized counts

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by naets_matthias • 0

vote

replies

1.9k

views

edger batch effect normalized counts

updated 7.2 years ago by Ryan C. Thompson ★ 7.9k • written 7.2 years ago by Yahan • 0

votes

replies

1.6k

views

deseq2 cqn normalization normalized counts

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by mark.ebbert • 0

votes

1.3k

views

normalized counts grch37 grch38 r bioconductor

7.5 years ago salvocomplicazioni1 • 0

vote

replies

1.9k

views

cn.mops log normalized counts table

updated 7.7 years ago by Günter Klambauer ▴ 540 • written 7.7 years ago by falk.zakrzewski • 0

vote

replies

1.7k

views

deseq2 counts normalized counts

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by snamjoshi87 ▴ 40

votes

replies

2.2k

views

shrna edger deseq2 differential expression normalized counts

8.7 years ago Jane Merlevede ▴ 90

vote

replies

3.3k

views

diffbind normalized counts

8.7 years ago GFM ▴ 20

12 results • Page 1 of 1

Recent ...

Replies

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

Votes

annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Awards • All

Popular Question to Ariel Chernomoretz ▴ 170