Bioconductor Normalized counts

Showing : normalized counts • reset

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1.4k

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scran scater normalized counts

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Radek ▴ 90

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1.4k

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deseq2 normalized counts

updated 6.3 years ago by Steve Lianoglou ★ 13k • written 6.3 years ago by anaQ • 0

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1.6k

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normalized counts log2

6.5 years ago agdif ▴ 10

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8.3k

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rnaseq deseq2 normalized counts

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by JoannaF ▴ 10

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5.6k

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deseq2 normalization normalized counts

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by naets_matthias • 0

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1.9k

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edger batch effect normalized counts

updated 7.1 years ago by Ryan C. Thompson ★ 7.9k • written 7.1 years ago by Yahan • 0

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deseq2 cqn normalization normalized counts

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by mark.ebbert • 0

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1.3k

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normalized counts grch37 grch38 r bioconductor

7.4 years ago salvocomplicazioni1 • 0

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1.9k

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cn.mops log normalized counts table

updated 7.6 years ago by Günter Klambauer ▴ 540 • written 7.6 years ago by falk.zakrzewski • 0

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1.6k

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deseq2 counts normalized counts

updated 8.6 years ago by Steve Lianoglou ★ 13k • written 8.6 years ago by snamjoshi87 ▴ 40

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2.2k

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shrna edger deseq2 differential expression normalized counts

8.6 years ago Jane Merlevede ▴ 90

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3.2k

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diffbind normalized counts

8.7 years ago GFM ▴ 20

12 results • Page 1 of 1

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Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0

I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co

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Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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Popular Question to Lluís Revilla Sancho ▴ 760