Bioconductor Normalized counts

Showing : normalized counts • reset

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1.5k

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scran scater normalized counts

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by Radek ▴ 90

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1.4k

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deseq2 normalized counts

updated 6.4 years ago by Steve Lianoglou ★ 13k • written 6.4 years ago by anaQ • 0

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1.7k

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normalized counts log2

6.6 years ago agdif ▴ 10

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8.4k

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rnaseq deseq2 normalized counts

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by JoannaF ▴ 10

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5.8k

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deseq2 normalization normalized counts

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by naets_matthias • 0

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edger batch effect normalized counts

updated 7.3 years ago by Ryan C. Thompson ★ 7.9k • written 7.3 years ago by Yahan • 0

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deseq2 cqn normalization normalized counts

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by mark.ebbert • 0

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normalized counts grch37 grch38 r bioconductor

7.6 years ago salvocomplicazioni1 • 0

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1.9k

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cn.mops log normalized counts table

updated 7.8 years ago by Günter Klambauer ▴ 540 • written 7.8 years ago by falk.zakrzewski • 0

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1.7k

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deseq2 counts normalized counts

updated 8.8 years ago by Steve Lianoglou ★ 13k • written 8.8 years ago by snamjoshi87 ▴ 40

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2.2k

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shrna edger deseq2 differential expression normalized counts

8.8 years ago Jane Merlevede ▴ 90

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diffbind normalized counts

8.8 years ago GFM ▴ 20

12 results • Page 1 of 1

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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Votes

Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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Great Question to inzirio ▴ 10