Bioconductor Normalized counts

Showing : normalized counts • reset

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1.3k

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scran scater normalized counts

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Radek ▴ 90

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1.3k

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deseq2 normalized counts

updated 6.0 years ago by Steve Lianoglou ★ 13k • written 6.0 years ago by anaQ • 0

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1.6k

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normalized counts log2

6.2 years ago agdif ▴ 10

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rnaseq deseq2 normalized counts

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by JoannaF ▴ 10

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deseq2 normalization normalized counts

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by naets_matthias • 0

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edger batch effect normalized counts

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by Yahan • 0

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deseq2 cqn normalization normalized counts

updated 7.1 years ago by Michael Love 42k • written 7.1 years ago by mark.ebbert • 0

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normalized counts grch37 grch38 r bioconductor

7.1 years ago salvocomplicazioni1 • 0

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1.8k

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cn.mops log normalized counts table

updated 7.3 years ago by Günter Klambauer ▴ 540 • written 7.3 years ago by falk.zakrzewski • 0

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1.5k

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deseq2 counts normalized counts

updated 8.3 years ago by Steve Lianoglou ★ 13k • written 8.3 years ago by snamjoshi87 ▴ 40

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2.1k

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shrna edger deseq2 differential expression normalized counts

8.3 years ago Jane Merlevede ▴ 90

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diffbind normalized counts

8.4 years ago GFM ▴ 20

12 results • Page 1 of 1

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

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Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20