Bioconductor Normalisation

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489

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DESeq2 Normalisation Bulkrnaseq Svaseq

6 months ago BioinfGuru ▴ 70

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687

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DESeq2 median-of-ratios normalisation

20 months ago msrch • 0

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1.2k

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normalisation DESEQ2

updated 3.3 years ago by swbarnes2 ★ 1.4k • written 3.3 years ago by xavier • 0

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3.8k

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deseq2 StringTie RNA-seq normalisation

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by JindrichK • 0

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1.5k

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DESEQ2 circRNA normalisation

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by zoe.ward • 0

5 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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Teacher to dsull ▴ 40