Bioconductor Nondetects

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480

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qPCR nondetects

17 months ago Ed Siefker ▴ 230

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983

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bug nondetects HTqPCR

updated 17 months ago by Nat.Nataren • 0 • written 18 months ago by Ed Siefker ▴ 230

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712

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nondetects qPCR qPCRData

3.9 years ago jhackett ▴ 30

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1.0k

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nondetects qpcrImpute

updated 5.9 years ago by Matthew McCall ▴ 830 • written 6.1 years ago by D.J.Coulson2 • 0

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2.2k

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nondetects software error

updated 7.1 years ago by corocla • 0 • written 7.2 years ago by Ryan C. Thompson ★ 7.9k

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2.4k

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qPCRset object nondetects r package txt

updated 17 months ago by Nat.Nataren • 0 • written 7.2 years ago by s.m.may • 0

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1.6k

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nondetects R PCR

updated 7.7 years ago by Matthew McCall ▴ 830 • written 7.7 years ago by garciaii_antuerpia • 0

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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…

Votes

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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