Bioconductor Nondetects

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495

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qPCR nondetects

17 months ago Ed Siefker ▴ 230

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996

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bug nondetects HTqPCR

updated 18 months ago by Nat.Nataren • 0 • written 19 months ago by Ed Siefker ▴ 230

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722

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nondetects qPCR qPCRData

3.9 years ago jhackett ▴ 30

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1.1k

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nondetects qpcrImpute

updated 5.9 years ago by Matthew McCall ▴ 830 • written 6.2 years ago by D.J.Coulson2 • 0

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2.3k

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nondetects software error

updated 7.2 years ago by corocla • 0 • written 7.3 years ago by Ryan C. Thompson ★ 7.9k

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2.5k

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qPCRset object nondetects r package txt

updated 18 months ago by Nat.Nataren • 0 • written 7.3 years ago by s.m.may • 0

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1.7k

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nondetects R PCR

updated 7.7 years ago by Matthew McCall ▴ 830 • written 7.7 years ago by garciaii_antuerpia • 0

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Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Votes

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

A: Contrasts & coefficients in limma

Answer: How to formulate 2 factor nested design in DESeq2

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