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no replicates
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0
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901
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MethylSig is not giving DMRs with no replicates
methylsig
no replicates
dmr
6.8 years ago
nilaycan
• 0
1
vote
5
replies
3.7k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
Tony
• 0
4
votes
9
replies
12k
views
DESeq2, no replicate
deseq2
no replicates
high p-adj values
updated 2.8 years ago by
Michael Love
43k • written 7.6 years ago by
Mahtetie
• 0
4
votes
8
replies
2.4k
views
Advice regarding RNAseq data with no replicates, best approach to accomplish fold-change
rnaseq
edger
DGE
no replicates
7.7 years ago
Stefany Solano
• 0
2
votes
1
reply
1.5k
views
diffHiC with no biological replicates?
diffhic
estimate dispersion value
glm
no replicates
deseq
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
hwick1
▴ 20
5
votes
7
replies
5.3k
views
Differential binding of ATAC-seq data with no replicates
ATAC
differential binding analysis
no replicates
DEseq2
chromatin
8.1 years ago
BioinfGuru
▴ 70
6 results • Page
1 of 1
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Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2
by
cold.wolverine.arku
• 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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