Bioconductor No replicates

Showing : no replicates • reset

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840

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methylsig no replicates dmr

6.3 years ago nilaycan • 0

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3.4k

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deseq2 without replicate no replicates

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by Tony • 0

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11k

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deseq2 no replicates high p-adj values

updated 2.3 years ago by Michael Love 42k • written 7.1 years ago by Mahtetie • 0

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2.1k

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rnaseq edger DGE no replicates

7.3 years ago Stefany Solano • 0

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1.4k

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diffhic estimate dispersion value glm no replicates deseq

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by hwick1 ▴ 20

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4.9k

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ATAC differential binding analysis no replicates DEseq2 chromatin

7.7 years ago BioinfGuru ▴ 70

6 results • Page 1 of 1

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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

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Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

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