Bioconductor Nmf

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4.2k

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NMF Biobase

updated 2.6 years ago by shepherl 4.1k • written 2.6 years ago by Abhishek • 0

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2.0k

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NMF scater

4.2 years ago lirongrossmann ▴ 50

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526

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NMF ZeiselBrainData

4.5 years ago sofia.puvogel • 0

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1.6k

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MutationalPatterns NMF

5.6 years ago TRASA • 0

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3.5k

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somaticsignatures NMF

updated 6.1 years ago by Xin • 0 • written 6.5 years ago by aslam.mohammed398 • 0

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937

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NMF log2 classification bioconductor

6.5 years ago Seymoo • 0

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1.2k

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NMF somaticsignatures R 3.4.3

updated 6.8 years ago by shepherl 4.1k • written 6.8 years ago by samuel.fux • 0

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3.4k

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somaticsignatures NMF

updated 7.2 years ago by grimmmmer • 0 • written 7.9 years ago by ns • 0

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2.7k

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deseq2 combat outliers NMF

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by noname • 0

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1.3k

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NMF minfi

8.8 years ago yura.grabovska ▴ 30

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1.3k

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affy coefmap nmf

updated 9.0 years ago by James W. MacDonald 67k • written 9.0 years ago by thrabe • 0

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1.8k

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sva somaticsignatures batch effect nmf

updated 9.1 years ago by Jeff Leek ▴ 650 • written 9.1 years ago by kw10 • 0

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1.7k

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NMF bioconductor R

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by Deepak Tanwar ▴ 10

13 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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