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nmf
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4.4k
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NMF installation with current R version
NMF
Biobase
updated 2.7 years ago by
shepherl
4.1k • written 2.7 years ago by
Abhishek
• 0
5
votes
5
replies
2.0k
views
Running NMF for single cell
NMF
scater
4.3 years ago
lirongrossmann
▴ 50
0
votes
0
replies
542
views
NMF in single cell analysis
NMF
ZeiselBrainData
4.5 years ago
sofia.puvogel
• 0
0
votes
0
replies
1.7k
views
Error in NMF estimation
MutationalPatterns
NMF
5.7 years ago
TRASA
• 0
0
votes
7
replies
3.5k
views
nmf function not working
somaticsignatures
NMF
updated 6.2 years ago by
Xin
• 0 • written 6.5 years ago by
aslam.mohammed398
• 0
0
votes
0
replies
956
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
6.6 years ago
Seymoo
• 0
0
votes
1
reply
1.2k
views
SomaticSignatures for Bioconductor 3.6 (R 3.4.3) depends on NMF, which is not available for R 3.4.3
NMF
somaticsignatures
R 3.4.3
updated 6.9 years ago by
shepherl
4.1k • written 6.9 years ago by
samuel.fux
• 0
0
votes
6
replies
3.4k
views
Somaticsignature NMF problem
somaticsignatures
NMF
updated 7.3 years ago by
grimmmmer
• 0 • written 8.0 years ago by
ns
• 0
0
votes
4
replies
2.7k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
noname
• 0
0
votes
0
replies
1.3k
views
Defining metagenes from NMF in methylation array data - next step?
NMF
minfi
8.9 years ago
yura.grabovska
▴ 30
0
votes
2
replies
1.4k
views
coefmap plot - label colors
affy
coefmap
nmf
updated 9.0 years ago by
James W. MacDonald
67k • written 9.0 years ago by
thrabe
• 0
0
votes
1
reply
1.9k
views
SomaticSignatures: negative entries after ComBat adjustment
sva
somaticsignatures
batch effect
nmf
updated 9.2 years ago by
Jeff Leek
▴ 650 • written 9.2 years ago by
kw10
• 0
0
votes
1
reply
1.7k
views
NMF Package error
NMF
bioconductor
R
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
Deepak Tanwar
▴ 10
13 results • Page
1 of 1
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Replies
Answer: Unable to find sample sheet file for ChAMP methylation data analysis
by
James W. MacDonald
67k
There is an example file in the extdata directory of the `minfiData` package that you could emulate.
Comment: Rain error: invalid annotation of time points
by
Dominik
• 0
Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…
Answer: How to generate circular cnetplot and color nodes and edges in the same plot ?
by
Guido Hooiveld
★ 4.1k
Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…
Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza
by
mec25
• 0
I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
by
Quang NN
▴ 10
Thank you so much for taking time to provide this clarification!
Votes
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
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