Bioconductor Newpackage

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newpackage rtracklayer

updated 8 months ago by shepherl 4.1k • written 8 months ago by Lucille • 0

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newpackage ChAMP

updated 2.1 years ago by Yi Ping • 0 • written 3.0 years ago by Brendon • 0

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newpackage Deadline Release Submission

3.1 years ago shepherl 4.1k

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release Submission newpackage Release Deadline

3.6 years ago • updated 3.5 years ago shepherl 4.1k

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CONSTANd newpackage

updated 3.4 years ago by guido.barzaghi • 0 • written 3.7 years ago by joris.vanhoutven ▴ 10

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newpackage vignette installation

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6 results • Page 1 of 1

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Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Fahd • 0

Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Yes, I understand the implications of replacing the `OrgDb` packages in release. Maybe an upload to the annotationHub or GitHub could be an…

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A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

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Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30