Bioconductor Newbie

Showing : newbie • reset

1

vote

2

replies

1.2k

views

flowStats newbie split subset flowCore

6.3 years ago yulia.chupalova • 0

0

votes

1

reply

1.1k

views

rnaseq deseq2 newbie

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by JanaM • 0

2 results • Page 1 of 1

Recent ...

Replies

Comment: Identifying potentially associated gene set to drug response using GSVA by coolmathforkids2 • 0

It is always helpful to see clear explanations and solutions for bioconductor related challenges. Posts like this make the community a valu…

Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Votes

Awards • All