Bioconductor Networks

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geneticinteractions cancer networks machine_learning

2.1 years ago Colm • 0

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cancer networks genomics epigenomics Job

5.4 years ago • updated 5.3 years ago marschaefer • 0

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WGCNA Networks

updated 6.1 years ago by Peter Langfelder ★ 3.0k • written 6.1 years ago by agustin.gonvi ▴ 20

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wgcna modules coexpression networks

7.1 years ago jol.espinoz ▴ 40

4 results • Page 1 of 1

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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Thanks for your time on this, I have also never seen anything quite like this before neither. The only confounding variable I received in t…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

If it was global changes then (in my head) why is there two populations of peaks (that to me indicates some sort of confouder) and also, if…

Comment: fast apply on RleList by story.benjamin ▴ 20

Here's a test data.set if you need: library(GenomicRanges) library(rtracklayer) # gr test test.gr <- GRanges(seqnames…

Answer: BiocParallel_1.40.1.tar.gz not available by shepherl 4.1k

Please try again. We have updated the BiocParallel package and BiocManager should work as expected (pulling 1.40.2 as source). The Landin…

Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0

Your approach works, but it implies manually rejecting the update of BiocParallel at each use of `BiocManager::install()`, which is pretty …

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Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

Limma outputs different results for same sample?

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Popular Question to story.benjamin ▴ 20