7.3 years ago
fshodan
•
0
0
votes
0
replies
903
views
0
votes
0
replies
696
views
7.3 years ago
fshodan
•
0
Recent ...
Replies
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
•
0
Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0
![enter image description here][1]…
Answer: DESeq2 - am I extracting results incorrectly?
by
James W. MacDonald
68k
If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
•
0
I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
Answer: Origin of the labels for the SingleCellMultiModal dataset
by
ATpoint
★
4.8k
If you check the underlying code a bit you find that there is a file with data sources:
```r
modes_file <- system.file("extdata", "metadat…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
★
4.8k
That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…
Votes
Awards
• All
Popular Question to
pcantalupo
▴
10
Popular Question to
slizchap
•
0
Scholar to
James W. MacDonald
68k
Locations
• All
Boston, MA USA, just now
Canada, 1 minute ago
United States, 27 minutes ago
United States, 30 minutes ago
United States, 33 minutes ago
Boston, MA USA, just now
Canada, 1 minute ago
United States, 27 minutes ago
United States, 30 minutes ago
United States, 33 minutes ago
Traffic: 791 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6