Bioconductor Nested

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623

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DESeq2 multifactorial nested

updated 22 months ago by Basti ▴ 780 • written 22 months ago by jd • 0

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1.4k

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nested DESeq2

updated 3.0 years ago by Michael Love 43k • written 3.1 years ago by yampolsk • 0

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1.3k

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deseq2 Phyloseq Nested

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by mpuli011 • 0

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1.0k

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deseq2 Paired Nested

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by julia.chariker ▴ 10

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1.2k

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deseq2 nested de

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by gaio.transposon • 0

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1.5k

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edgeR nested glm glmQLFit

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by jcalis ▴ 10

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2.7k

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edger nested design matrix differential expression

updated 10.0 years ago by Aaron Lun ★ 28k • written 10.0 years ago by Mauve • 0

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2.1k

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edger nested estimatedispersions

10.0 years ago Mauve • 0

8 results • Page 1 of 1

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Comment: error in ChAMP loading file by 81becky • 0

hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…

Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0

how you did it pls explain

Votes

A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =

Comment: Unused arguments error without used arguments in GSVA?

Awards • All

Teacher to Gordon Smyth 52k

Scholar to James W. MacDonald 68k