Bioconductor Neqc

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neqc illumina geo limma

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by akridgerunner ▴ 30

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limma arrayweights logfoldchange neqc normalization

updated 8.7 years ago by svlachavas ▴ 840 • written 8.7 years ago by merella.stefania • 0

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neqc limma microarray illumina

updated 9.0 years ago by Gordon Smyth 52k • written 9.0 years ago by alexvpickering ▴ 110

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6

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limma neqc

updated 9.1 years ago by Gordon Smyth 52k • written 14.0 years ago by Arnar Flatberg ▴ 70

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k