Bioconductor Ncbi geo

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NCBI GEO

updated 4.1 years ago by SAn • 0 • written 8.9 years ago by maedakus ▴ 10

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geoquery ncbi geo biobase

6.1 years ago cschot3 • 0

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limma differential gene expression ncbi geo affymetrix microarrays

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Francesca McGrath • 0

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frma barcode geneexpression gsm ncbi geo

updated 7.1 years ago by Matthew McCall ▴ 830 • written 7.1 years ago by diana.elassal • 0

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limma microarray bioconductor ncbi geo

updated 8.0 years ago by Gordon Smyth 52k • written 8.0 years ago by kevin.m.hao ▴ 10

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geoquery ncbi geo geo data

8.1 years ago fongchunchan ▴ 30

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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