Bioconductor Ncbi geo

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NCBI GEO

updated 4.4 years ago by SAn • 0 • written 9.2 years ago by maedakus ▴ 10

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geoquery ncbi geo biobase

6.4 years ago cschot3 • 0

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limma differential gene expression ncbi geo affymetrix microarrays

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by Francesca McGrath • 0

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frma barcode geneexpression gsm ncbi geo

updated 7.4 years ago by Matthew McCall ▴ 830 • written 7.4 years ago by diana.elassal • 0

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limma microarray bioconductor ncbi geo

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by kevin.m.hao ▴ 10

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4.8k

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geoquery ncbi geo geo data

8.4 years ago fongchunchan ▴ 30

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Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0

It worked. Thanks :)

Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR by skiaphrene ▴ 10

Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…

Comment: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

What sort of object is `expression`? Does it contain any missing values?

Answer: Deleted:No significant MVPs with a BH adjusted P-value below 0.05 by shocked.tick.zyet • 0

Dealing with those adjusted p-values in ChAMP can feel like a frustrating game of [Uno Online](https://unoonlinefree.com) , especially when…

Comment: DESeq2 lfcShrink drastic shrinkage by Nick • 0

Did you ever figure out the cause of this? I am seeing very similar results and wondering if you have advice on how you may have resolved t…

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Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

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