Bioconductor Ncbi geo

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NCBI GEO

updated 4.2 years ago by SAn • 0 • written 9.0 years ago by maedakus ▴ 10

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geoquery ncbi geo biobase

6.2 years ago cschot3 • 0

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limma differential gene expression ncbi geo affymetrix microarrays

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Francesca McGrath • 0

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frma barcode geneexpression gsm ncbi geo

updated 7.2 years ago by Matthew McCall ▴ 830 • written 7.2 years ago by diana.elassal • 0

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limma microarray bioconductor ncbi geo

updated 8.0 years ago by Gordon Smyth 52k • written 8.1 years ago by kevin.m.hao ▴ 10

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geoquery ncbi geo geo data

8.2 years ago fongchunchan ▴ 30

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Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0

thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…

Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

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Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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