Bioconductor Narrowpeaks

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Rsubread atac-seq narrowpeaks featurecounts

updated 7.2 years ago by Wei Shi ★ 3.6k • written 7.2 years ago by j.bergenstrahle ▴ 90

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 9.7 years ago by Gordon Smyth 52k • written 9.7 years ago by samuel collombet ▴ 140

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ChIPSeq chipseq NarrowPeaks ChIPSeq chipseq NarrowPeaks

10.8 years ago Robert Chase ▴ 10

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GO DiffBind NarrowPeaks GO DiffBind NarrowPeaks

11.0 years ago Rory Stark ★ 5.2k

4 results • Page 1 of 1

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Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0

@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…

Comment: error in ChAMP loading file by 81becky • 0

hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…

Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Votes

Answer: Efficiently working with HDF5-backed SingleCellExperiments

Efficiently working with HDF5-backed SingleCellExperiments

A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

Awards • All

Popular Question to Vincent J. Carey, Jr. 6.7k

Teacher to Gordon Smyth 52k

Scholar to James W. MacDonald 68k