Bioconductor Narrowpeaks

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Rsubread atac-seq narrowpeaks featurecounts

updated 7.2 years ago by Wei Shi ★ 3.6k • written 7.2 years ago by j.bergenstrahle ▴ 90

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 9.7 years ago by Gordon Smyth 52k • written 9.7 years ago by samuel collombet ▴ 140

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ChIPSeq chipseq NarrowPeaks ChIPSeq chipseq NarrowPeaks

10.8 years ago Robert Chase ▴ 10

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GO DiffBind NarrowPeaks GO DiffBind NarrowPeaks

11.0 years ago Rory Stark ★ 5.2k

4 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k