Showing : mus musculus • reset
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How to download All Protein Protein Interactions of an organism with Bioconductor
ppi stringdb mus musculus
updated 7.1 years ago by ▴ 110 • written 7.1 years ago by ▴ 20
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biomaRT biotype TFs only
biomart TF biotype ensembl mus musculus
updated 7.3 years ago by ★ 6.6k • written 7.3 years ago by ▴ 60
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GenomeinfoDB
Mus musculus GenomeInfoDb Mus musculus GenomeInfoDb
updated 10.8 years ago by ▴ 390 • written 10.8 years ago by ★ 13k
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BSgenome.Mmusculus.UCSC.mm10 and upstream sequences.
Mus musculus BSgenome BSgenome Mus musculus BSgenome BSgenome
updated 11.5 years ago by 16k • written 11.5 years ago by ▴ 760
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lumiR returns ExpressionSet object instead of LumiBatch
GO Mus musculus BSgenome BSgenome lumi GO Mus musculus BSgenome BSgenome lumi
updated 11.8 years ago by ▴ 440 • written 11.8 years ago by ★ 13k
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Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.1 years ago Matthew Thornton ▴ 380
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno
12.2 years ago Julie Zhu ★ 4.3k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO
15.2 years ago Dick Beyer ★ 1.4k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO
updated 15.2 years ago by 21k • written 15.2 years ago by ★ 1.4k
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control probes and missing annotations in Affy Mouse Gene 1.0 ST arrays
Annotation Mus musculus probe affy Annotation Mus musculus probe affy
15.4 years ago Robert Castelo ★ 3.4k
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GenomeGraphs/biomaRt/getBM on older genome builds
Mus musculus biomaRt GenomeGraphs Mus musculus biomaRt GenomeGraphs
updated 15.9 years ago by ▴ 600 • written 15.9 years ago by ★ 1.1k
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confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
16.8 years ago Lynn Amon ▴ 280
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organism = mouse or Mus Musculus in AnnBuilder
Microarray Organism Mus musculus AnnBuilder Microarray Organism Mus musculus AnnBuilder
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ▴ 140
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decideTests and topTable
Microarray Mus musculus limma Microarray Mus musculus limma
updated 20.0 years ago by 52k • written 20.0 years ago by ▴ 10
14 results • Page 1 of 1
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Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq by caroline.zanchi • 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
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Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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