Showing : mus musculus • reset
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How to download All Protein Protein Interactions of an organism with Bioconductor
ppi stringdb mus musculus
updated 6.7 years ago by ▴ 110 • written 6.7 years ago by ▴ 20
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biomaRT biotype TFs only
biomart TF biotype ensembl mus musculus
updated 6.8 years ago by ★ 6.6k • written 6.8 years ago by ▴ 60
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GenomeinfoDB
Mus musculus GenomeInfoDb Mus musculus GenomeInfoDb
updated 10.4 years ago by ▴ 390 • written 10.4 years ago by ★ 13k
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BSgenome.Mmusculus.UCSC.mm10 and upstream sequences.
Mus musculus BSgenome BSgenome Mus musculus BSgenome BSgenome
updated 11.1 years ago by 16k • written 11.1 years ago by ▴ 760
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lumiR returns ExpressionSet object instead of LumiBatch
GO Mus musculus BSgenome BSgenome lumi GO Mus musculus BSgenome BSgenome lumi
updated 11.4 years ago by ▴ 440 • written 11.4 years ago by ★ 13k
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Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
11.7 years ago Matthew Thornton ▴ 380
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno
11.7 years ago Julie Zhu ★ 4.3k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO
14.7 years ago Dick Beyer ★ 1.4k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO
updated 14.7 years ago by 21k • written 14.7 years ago by ★ 1.4k
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control probes and missing annotations in Affy Mouse Gene 1.0 ST arrays
Annotation Mus musculus probe affy Annotation Mus musculus probe affy
15.0 years ago Robert Castelo ★ 3.4k
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GenomeGraphs/biomaRt/getBM on older genome builds
Mus musculus biomaRt GenomeGraphs Mus musculus biomaRt GenomeGraphs
updated 15.5 years ago by ▴ 600 • written 15.5 years ago by ★ 1.1k
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confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
16.4 years ago Lynn Amon ▴ 280
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organism = mouse or Mus Musculus in AnnBuilder
Microarray Organism Mus musculus AnnBuilder Microarray Organism Mus musculus AnnBuilder
updated 19.5 years ago by ★ 2.9k • written 19.5 years ago by ▴ 140
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decideTests and topTable
Microarray Mus musculus limma Microarray Mus musculus limma
updated 19.6 years ago by 51k • written 19.6 years ago by ▴ 10
14 results • Page 1 of 1
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Comment: Struggle with the replicates of epic array data by Melisa Tecik • 0
Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …
Answer: bioconductor packages on bioconda by James W. MacDonald 67k
The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.
Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k
The default for `plotKaryotype` is to use hg19.
Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20
saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.
Comment: Create Illmina bead summary data by Liu • 0
Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …
Votes
Answer: Struggle with the replicates of epic array data
Answer: bioconductor packages on bioconda
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
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Scholar to James W. MacDonald 67k
Popular Question to shepherl 4.1k
Popular Question to David R ▴ 90
Popular Question to Gordon Smyth 51k
Popular Question to sap275 ▴ 10
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