Showing : multtest • reset
0
votes
2
replies
455
views
Cross-validation with multiple control subgroups in limma
limma multtest
4 weeks ago Ali Barry ▴ 40
0
votes
0
replies
737
views
Correcting for multiple comparisons in permutation procedure using multtest
multtest ss.maxT ss.minP sd.maxT
4.7 years ago john.gordon.yellow • 0
0
votes
1
reply
1.0k
views
Trouble with multtest
mt.teststat multtest
7.3 years ago dutzr14 • 0
1
vote
0
replies
2.1k
views
DE analysis of PCR array [was: dataset dim for siggenes]
qPCR Normalization multtest limma siggenes
10.4 years ago • updated 8.0 years ago Gordon Smyth 52k
0
votes
1
reply
1.5k
views
Cannot load library multtest; package or namespace load failed
multtest
8.2 years ago Guido Hooiveld ★ 4.1k
0
votes
3
replies
2.9k
views
mt.teststat
multtest DECIPHER multtest DECIPHER
updated 9.0 years ago by ▴ 20 • written 21.8 years ago by ▴ 220
1
vote
1
reply
1.4k
views
Not getting Adjusted p-values from multtest package
multtest methylation adjusted pvalue
updated 9.2 years ago by ▴ 110 • written 9.2 years ago by ▴ 10
4
votes
2
replies
6.2k
views
Adjust p-values of a matrix of p-values
multtest
updated 10.2 years ago by 52k • written 10.2 years ago by ▴ 260
0
votes
2
replies
1.4k
views
About correlation tests between pairs of genes
multtest
updated 10.2 years ago by ★ 3.8k • written 10.2 years ago by ▴ 260
0
votes
1
reply
1.6k
views
prefiltering genelist before LIMMA & cut-off paramter for getting DEGs from topT object.
multtest multtest
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ★ 13k
0
votes
0
replies
1.9k
views
Fwd: (adj.p.value & log2FC) or (B.value & log2FC)
multtest limma multtest limma
11.1 years ago debatosh das ▴ 10
0
votes
0
replies
1.2k
views
question about wilcoxon sign rank in multtest package
multtest multtest
12.4 years ago Islam Amin ▴ 10
0
votes
0
replies
1.3k
views
converting intensity values to log ratios?
multtest limma siggenes convert multtest limma siggenes convert
13.0 years ago James W. MacDonald 67k
0
votes
1
reply
1.0k
views
Difference between Multtest and SAM
multtest multtest
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 170
0
votes
3
replies
1.2k
views
class label
Normalization multtest Normalization multtest
updated 14.1 years ago by 25k • written 14.1 years ago by ▴ 170
0
votes
1
reply
1.9k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 14.1 years ago by 25k • written 14.1 years ago by ▴ 20
0
votes
1
reply
1.7k
views
problems : getting error : Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0010817" not found
multtest GOstats biomaRt multtest GOstats biomaRt
updated 15.0 years ago by 67k • written 15.0 years ago by ▴ 810
0
votes
1
reply
1.1k
views
Question on the paired ttest in multtest package
multtest multtest
updated 15.5 years ago by 67k • written 15.5 years ago by ▴ 40
0
votes
0
replies
1.4k
views
multtest: how to adjust multiple contrasts in a single run?
moe430a multtest affy limma moe430a multtest affy limma
15.6 years ago Guido Hooiveld ★ 4.1k
0
votes
3
replies
4.0k
views
problem updating packages importing the package "MASS"
multtest multtest
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 830
0
votes
0
replies
975
views
P-values returned from siggenes's sam() function
multtest multtest
15.7 years ago Michal Blazejczyk ▴ 320
0
votes
1
reply
1.6k
views
Limma- Filtering After Statistical Analysis
genefilter multtest limma genefilter multtest limma
updated 16.0 years ago by 52k • written 16.0 years ago by ▴ 250
0
votes
0
replies
1.1k
views
Help for ANOVA test
multtest limma multtest limma
16.0 years ago John Antonydas Gaspar ▴ 130
0
votes
2
replies
1.7k
views
multtest different seed
multtest multtest
16.4 years ago Stefano Moretti ▴ 20
0
votes
2
replies
1.5k
views
'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
16.6 years ago Glazko, Galina ▴ 350
0
votes
3
replies
1.5k
views
Webbioc error exprSet vs expressionSet
Preprocessing multtest webbioc Preprocessing multtest webbioc
16.8 years ago Balasubramanian Ganesan ▴ 70
0
votes
0
replies
1.1k
views
Extracting expressions after a multtest procedure (part2)
Cancer multtest Cancer multtest
16.9 years ago JUAN MIGUEL MARIN DIAZARAQUE ▴ 70
0
votes
3
replies
1.3k
views
Extracting expressions after a multtest procedure (part 2)
multtest multtest
updated 16.9 years ago by 21k • written 16.9 years ago by ▴ 70
0
votes
0
replies
1.2k
views
Extracting expressions after a multtest procedure
multtest multtest
16.9 years ago JUAN MIGUEL MARIN DIAZARAQUE ▴ 70
0
votes
0
replies
1.5k
views
multtest MTP raw P values = 0
multtest multtest
16.9 years ago Timur Shtatland ▴ 30
0
votes
0
replies
1.3k
views
multtest MTP raw P values = 0
multtest multtest
16.9 years ago Timur Shtatland ▴ 30
0
votes
0
replies
905
views
p-value output from MTP (multtest) into scientific notations
multtest multtest
17.1 years ago Boel Brynedal ▴ 200
0
votes
0
replies
1.2k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
17.2 years ago Boel Brynedal ▴ 200
0
votes
1
reply
922
views
Limma: eBayes makes p-values larger
Cancer multtest limma Cancer multtest limma
updated 17.2 years ago by 67k • written 17.2 years ago by ★ 1.9k
0
votes
6
replies
3.7k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 17.4 years ago by ▴ 220 • written 17.4 years ago by ★ 2.2k
0
votes
0
replies
2.0k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
17.4 years ago Min Wook Kim ▴ 20
0
votes
1
reply
1.4k
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
17.5 years ago Benjamin Otto ▴ 830
0
votes
1
reply
1.5k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
17.6 years ago Steven McKinney ▴ 310
0
votes
2
replies
1.2k
views
help for siggene installation
Biobase multtest Biobase multtest
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 60
0
votes
3
replies
2.2k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.8 years ago by ★ 7.4k • written 17.8 years ago by ▴ 80
0
votes
3
replies
1.5k
views
webbioc chicken
Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc
updated 17.9 years ago by ▴ 870 • written 17.9 years ago by ▴ 20
0
votes
3
replies
1.4k
views
GOstats hyperGTest question
Biobase annotate genefilter multtest graph Biobase annotate genefilter multtest graph
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 80
0
votes
2
replies
1.4k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 18.0 years ago by 21k • written 18.0 years ago by ▴ 50
0
votes
1
reply
1.4k
views
[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 18.2 years ago by ▴ 900 • written 18.2 years ago by 25k
0
votes
5
replies
1.9k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ▴ 890
0
votes
0
replies
1.1k
views
help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
18.2 years ago Kimpel, Mark W ▴ 890
0
votes
0
replies
1.3k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest affy affydata graph limma gcrma
18.2 years ago Martin Morgan 25k
0
votes
4
replies
1.4k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 18.2 years ago by 25k • written 18.2 years ago by ★ 2.2k
0
votes
0
replies
760
views
sensitivity of maxT correction
multtest multtest
18.3 years ago A S ▴ 10
0
votes
3
replies
2.2k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 18.3 years ago by 67k • written 18.3 years ago by ▴ 350
50 results • Page 1 of 1
Recent ...
Replies
Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k
The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280
`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…
Answer: affymetrix by James W. MacDonald 67k
When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…
Answer: Problems with GSEA by Guido Hooiveld ★ 4.1k
The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …
Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0
It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!
Votes
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Awards • All
Popular Question to Martin Morgan 25k
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to Joseph Fass ▴ 70
Popular Question to Peter Hickey ▴ 750
Popular Question to Gordon Smyth 52k
Locations • All
WEHI, Melbourne, Australia, 5 minutes ago
The Netherlands, 19 minutes ago
United States, 21 minutes ago
Canada, 30 minutes ago
United States, 31 minutes ago
Traffic: 386 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6