Showing : multiple treatments • reset
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DESeq2 paired design with missing samples and multiple conditions
deseq2 paired samples missing data multiple treatments
updated 6.0 years ago by 42k • written 6.0 years ago by • 0
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Differentially expressed genes across multiple conditions
differential gene expression limma voom multiple treatments
updated 6.4 years ago by 67k • written 6.4 years ago by ▴ 10
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DESeq2 time-series data of multiple treatments with common time 0
deseq2 multiple time points multiple treatments
updated 7.5 years ago by 42k • written 7.5 years ago by • 0
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seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
bioinformatics paper multiple treatments biologicalreplicates
updated 8.4 years ago by 51k • written 8.4 years ago by ▴ 80
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Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray limma multiple treatments lfc
updated 8.5 years ago by ★ 28k • written 8.5 years ago by • 0
5 results • Page 1 of 1
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error by James W. MacDonald 67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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