Bioconductor Multifactor

Showing : multifactor • reset

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1.1k

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edger design multifactor

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by jackiesalzbank • 0

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1.1k

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deseq2 design multifactor

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by sxp585 • 0

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1.2k

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deseq2 multifactor interaction term gender effect 3-factors

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by kmu004 ▴ 50

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1.9k

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multifactor nested design deseq2

8.4 years ago swaegers.janne • 0

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1.8k

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edger multifactor nested design

8.5 years ago • updated 8.4 years ago swaegers.janne • 0

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3.8k

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deseq2 multifactor pairwise

8.8 years ago • updated 8.7 years ago aziza ▴ 20

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5.9k

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deseq2 LRT multifactor contrast interactions

9.1 years ago • updated 9.0 years ago rclaire ▴ 20

7 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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Popular Question to maltethodberg ▴ 180