Bioconductor Msigdb

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752

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GSEABase fgsea msigdb GeneSetEnrichment

4 months ago Assa Yeroslaviz ★ 1.5k

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333

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msigdb fgsea msig

7 months ago Tanvi • 0

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634

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geneset GeneSetEnrichment msigdb

9 months ago Seongsu • 0

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748

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msigdb gmt GSEA

written 10 months ago by Georg • 0

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2.5k

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ssgsea GSVA biotype proteincoding msigdb

updated 3 months ago by Ginny • 0 • written 13 months ago by snijesh ▴ 200

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1.8k

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msigdb GSEABase GSVA

updated 2.8 years ago by Robert Castelo ★ 3.4k • written 2.8 years ago by forlani.luca • 0

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2.2k

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gseabase msigdb genesetcollection Tutorial

written 6.6 years ago by t.kuilman ▴ 170

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4.8k

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clusterprofiler GSEA MSIGDB

updated 6.8 years ago by Guangchuang Yu ★ 1.2k • written 6.9 years ago by thomasjenner333 • 0

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1.6k

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limma romer msigdb

updated 9.4 years ago by James W. MacDonald 67k • written 9.4 years ago by Jon Manning ▴ 40

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1.5k

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category gostats msigdb hypergeometric test

9.5 years ago petyuk ▴ 70

10 results • Page 1 of 1

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Comment: EdgeR Biological CVs by ATpoint ★ 4.6k

"Joseph" is a spam bot...

Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k

GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…

Votes

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

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