Bioconductor Motifdb

Showing : motifdb • reset

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2.8k

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Motifdb

updated 2.7 years ago by gunjan.dikshit • 0 • written 4.5 years ago by snystrom ▴ 10

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1.9k

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pwm pfm jaspar motifdb

updated 5.8 years ago by Bioconductor Community 0 • written 6.0 years ago by chrisclarkson100 ▴ 50

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1.3k

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motifdb

updated 7.1 years ago by Paul Shannon ▴ 470 • written 7.1 years ago by scotronq • 0

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1.7k

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motifdb

updated 7.2 years ago by Paul Shannon ▴ 470 • written 7.2 years ago by Yiwei Niu ▴ 20

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1.7k

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MotifDb library load

updated 7.7 years ago by Paul Shannon ▴ 470 • written 7.7 years ago by Pengcheng Yang ▴ 60

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1.5k

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motifdb bioclite

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by mirzabiotech2000 • 0

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1.6k

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motifdb matchpwm motif pwmenrich pwm

9.0 years ago vinod.acear ▴ 50

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4.3k

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motif motifdb meme

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by vinod.acear ▴ 50

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2.4k

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pwmenrich MotifDB

updated 9.0 years ago by Robert Stojnic ▴ 50 • written 9.0 years ago by elliott77 • 0

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2.2k

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motifdb JASPAR transcription factor binding site

9.0 years ago Lisa Hopcroft ▴ 40

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2.7k

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BSgenome convert BSgenome PWMEnrich MotifDb

updated 10.2 years ago by Robert Stojnic ▴ 80 • written 10.2 years ago by deepti anand ▴ 50

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1.5k

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rGADEM MotIV MotifDb rGADEM MotIV MotifDb

10.7 years ago Bahar ▴ 10

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1.4k

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Transcription MotifDb Transcription MotifDb

10.7 years ago Paul Shannon ▴ 470

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883

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MotifDb MotifDb

10.8 years ago T M ▴ 10

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1.4k

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rGADEM MotifDb rGADEM MotifDb

updated 11.7 years ago by José Luis Lavín ▴ 80 • written 11.7 years ago by Paul Shannon ▴ 750

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1.8k

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Transcription MotIV MotifDb Transcription MotIV MotifDb

updated 12.0 years ago by Jing Huang ▴ 380 • written 12.0 years ago by Paul Shannon ▴ 750

16 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k