Bioconductor MotifbreakR

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Biostrings aminoacid motifbreakR

written 4 months ago by wilson_ava • 0

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GenomeInfoDb motifbreakR

3.7 years ago Chris Seidel ▴ 80

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MotifbreakR R motifs

5.7 years ago camerond • 0

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motifbreakR vcf snps motif analysis

updated 6.5 years ago by Valerie Obenchain ★ 6.8k • written 6.5 years ago by svlachavas ▴ 840

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bioconductor motifbreakr plotmb

7.1 years ago priyankaraina10 • 0

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1.4k

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motifbreakR variantannotation

updated 9.2 years ago by Simon Coetzee ▴ 50 • written 9.2 years ago by ashley.doane ▴ 20

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Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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