Bioconductor Modelmatrix

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ALDEx2 modelmatrix covariates

16 months ago amir • 0

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DESeq2 limma modelmatrix edgeR designmatrix

updated 3.0 years ago by Gordon Smyth 51k • written 3.1 years ago by rebecca.lea.johnston • 0

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interactionterm edgeR modelmatrix

3.8 years ago ahsindoomilup • 0

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Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k

Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Jason • 0

Any update on the resolution to this? I'm having the same issue with another species.

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Answer: Handling biological replicates in DESeq2

A: Does edgeR need to specify reference group?

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Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20