Showing : model matrix • reset
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Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma model matrix linear regression
5.4 years ago agm • 0
1
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2
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1.6k
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DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 6.8 years ago by 42k • written 6.8 years ago by • 0
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7
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1.6k
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Model matrix not full rank
deseq2 linear combination model matrix
updated 7.1 years ago by 42k • written 7.1 years ago by • 0
2
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4
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1.4k
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.1 years ago by ★ 13k • written 7.1 years ago by ▴ 90
3
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6
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29k
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Designing a contrast in DESEQ
deseq2 design and contrast matrix model matrix
7.7 years ago mrigaya.mehra ▴ 10
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2.0k
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DESeq2 glibc error
deseq2 differential gene expression model matrix
updated 7.8 years ago by 42k • written 7.8 years ago by ▴ 10
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6
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Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger deseq2 model matrix differential expression
8.2 years ago ta65 • 0
2
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7
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3.3k
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ballgown custom models
ballgown linear model model matrix custom model
8.7 years ago • updated 8.6 years ago sbcn ▴ 80
7
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6
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4.3k
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Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma model matrix limma design matrix complex-design
updated 9.4 years ago by ★ 28k • written 9.4 years ago by ★ 4.1k
9
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Limma Model Matrix Understanding
limma limma design matrix model matrix
updated 9.6 years ago by ★ 28k • written 9.6 years ago by ▴ 370
2
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5
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4.2k
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design model matrix for nested factors (edgeR)
edger design matrix model matrix
updated 9.6 years ago by ★ 28k • written 9.6 years ago by • 0
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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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