Bioconductor Missing data

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

5.0 years ago jam526 • 0

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3.1k

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deseq2 sample_table missing data

updated 5.8 years ago by g.wang2 • 0 • written 9.7 years ago by anpham ▴ 60

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deseq2 paired samples missing data multiple treatments

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by greg.deakin • 0

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2.8k

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limma missing data methylation normalization

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by mheydarpour ▴ 10

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2.6k

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limma contrast missing data lmfit makecontrasts

updated 7.2 years ago by Gordon Smyth 51k • written 7.3 years ago by wewolski ▴ 10

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949

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pcamethods missing data

7.6 years ago eli-sava • 0

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software error rnaseq wgcna missing data

8.9 years ago • updated 8.6 years ago dvillarlozano ▴ 10

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1.1k

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cellhts2 upload missing data

updated 8.8 years ago by Joseph Barry ▴ 160 • written 8.8 years ago by zmorehouse • 0

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1.1k

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missing data filter

updated 9.0 years ago by James W. MacDonald 67k • written 9.0 years ago by rgescudero • 0

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1.6k

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missing data missing value imputation impute MICE bioconductor

9.1 years ago svlachavas ▴ 830

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software error missing data workflowinstall

9.5 years ago anoll2 • 0

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bayseq missing data

9.6 years ago k.w.lau • 0

12 results • Page 1 of 1

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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