Bioconductor Missing data

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

5.5 years ago jam526 • 0

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deseq2 sample_table missing data

updated 6.3 years ago by g.wang2 • 0 • written 10.1 years ago by anpham ▴ 70

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deseq2 paired samples missing data multiple treatments

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by greg.deakin • 0

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3.1k

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limma missing data methylation normalization

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by mheydarpour ▴ 10

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limma contrast missing data lmfit makecontrasts

updated 7.7 years ago by Gordon Smyth 52k • written 7.7 years ago by wewolski ▴ 10

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pcamethods missing data

8.1 years ago eli-sava • 0

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software error rnaseq wgcna missing data

9.4 years ago • updated 9.0 years ago dvillarlozano ▴ 10

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cellhts2 upload missing data

updated 9.3 years ago by Joseph Barry ▴ 160 • written 9.3 years ago by zmorehouse • 0

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missing data filter

updated 9.4 years ago by James W. MacDonald 68k • written 9.4 years ago by rgescudero • 0

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missing data missing value imputation impute MICE bioconductor

9.6 years ago svlachavas ▴ 840

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software error missing data workflowinstall

10.0 years ago anoll2 • 0

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bayseq missing data

10.0 years ago k.w.lau • 0

12 results • Page 1 of 1

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Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

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A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

A: Contrasts & coefficients in limma

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Great Question to inzirio ▴ 10