Bioconductor MinfiDataEPIC

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minfiDataEPIC

5 months ago yemeijie123 • 0

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minfi minfiDataEPIC

updated 10 weeks ago by Aurora • 0 • written 7 months ago by e1271094 • 0

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minfi minfiDataEPIC

9 months ago Felix • 0

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minfiDataEPIC minfi

updated 13 months ago by Basti ▴ 780 • written 13 months ago by Ana • 0

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 15 months ago by Basti ▴ 780 • written 15 months ago by titangerd • 0

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minfiDataEPIC EpicV2

updated 15 months ago by Zuguang Gu ▴ 290 • written 16 months ago by Izabela.ams • 0

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minfiDataEPIC minfi

updated 16 months ago by James W. MacDonald 67k • written 16 months ago by phelankj • 0

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minfiDataEPIC methylationArrayAnalysis

updated 17 months ago by ATpoint ★ 4.6k • written 17 months ago by rae.alshammari ▴ 10

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methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray

updated 20 months ago by Gordon Smyth 52k • written 21 months ago by Grace • 0

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Quantile noob Normalization minfi minfiDataEPIC

updated 2.3 years ago by James W. MacDonald 67k • written 2.3 years ago by mikat • 0

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minfiDataEPIC #SexPrediction minfi

updated 3.2 years ago by Basti ▴ 780 • written 3.2 years ago by nucasa • 0

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minfiData plotsex minfi minfiDataEPIC r

updated 3.8 years ago by suman • 0 • written 3.8 years ago by Bethan • 0

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minfiDataEPIC arrays limma minfi Epigenetics

updated 4.1 years ago by Gordon Smyth 52k • written 4.1 years ago by Jeff ▴ 20

13 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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