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minfiDataEPIC
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308
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How to perform a methylation analyisis from beta values matrix and pd.csv
minfiDataEPIC
7 months ago
yemeijie123
• 0
2
votes
3
replies
1.5k
views
minfi latest update for EPIC V2 chip
minfi
minfiDataEPIC
updated 4 weeks ago by
macdonaldfrench7286566
• 0 • written 9 months ago by
e1271094
• 0
0
votes
0
replies
567
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
11 months ago
Felix
• 0
0
votes
1
reply
685
views
Error in reading my csv file in minfi
minfiDataEPIC
minfi
updated 14 months ago by
Basti
▴ 780 • written 14 months ago by
Ana
• 0
0
votes
1
reply
817
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 16 months ago by
Basti
▴ 780 • written 16 months ago by
titangerd
• 0
0
votes
6
replies
2.7k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 16 months ago by
Zuguang Gu
▴ 290 • written 17 months ago by
Izabela.ams
• 0
0
votes
1
reply
699
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC
minfi
updated 17 months ago by
James W. MacDonald
67k • written 17 months ago by
phelankj
• 0
0
votes
1
reply
3.6k
views
Warning messages in detecting P-values
minfiDataEPIC
methylationArrayAnalysis
updated 18 months ago by
ATpoint
★ 4.6k • written 18 months ago by
rae.alshammari
▴ 10
0
votes
1
reply
781
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis
minfi
MethylationArrayData
minfiDataEPIC
MethylationArray
updated 22 months ago by
Gordon Smyth
52k • written 22 months ago by
Grace
• 0
0
votes
1
reply
1.4k
views
Density Plot using Noob Normalisation vs Quantile Normalisation
Quantile
noob
Normalization
minfi
minfiDataEPIC
updated 2.4 years ago by
James W. MacDonald
67k • written 2.4 years ago by
mikat
• 0
0
votes
1
reply
1.2k
views
EPIC ARRAY ANALYSIS
minfiDataEPIC
#SexPrediction
minfi
updated 3.3 years ago by
Basti
▴ 780 • written 3.3 years ago by
nucasa
• 0
1
vote
1
reply
2.6k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 3.9 years ago by
suman
• 0 • written 3.9 years ago by
Bethan
• 0
0
votes
2
replies
2.3k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 4.2 years ago by
Gordon Smyth
52k • written 4.2 years ago by
Jeff
▴ 20
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Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
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Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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