Bioconductor MinfiDataEPIC

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minfiDataEPIC

6 months ago yemeijie123 • 0

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minfi minfiDataEPIC

updated 29 days ago by macdonaldfrench7286566 • 0 • written 8 months ago by e1271094 • 0

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minfi minfiDataEPIC

10 months ago Felix • 0

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minfiDataEPIC minfi

updated 14 months ago by Basti ▴ 780 • written 14 months ago by Ana • 0

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 16 months ago by Basti ▴ 780 • written 16 months ago by titangerd • 0

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minfiDataEPIC EpicV2

updated 16 months ago by Zuguang Gu ▴ 290 • written 17 months ago by Izabela.ams • 0

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minfiDataEPIC minfi

updated 17 months ago by James W. MacDonald 67k • written 17 months ago by phelankj • 0

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minfiDataEPIC methylationArrayAnalysis

updated 18 months ago by ATpoint ★ 4.6k • written 18 months ago by rae.alshammari ▴ 10

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methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray

updated 22 months ago by Gordon Smyth 52k • written 22 months ago by Grace • 0

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Quantile noob Normalization minfi minfiDataEPIC

updated 2.4 years ago by James W. MacDonald 67k • written 2.4 years ago by mikat • 0

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minfiDataEPIC #SexPrediction minfi

updated 3.3 years ago by Basti ▴ 780 • written 3.3 years ago by nucasa • 0

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minfiData plotsex minfi minfiDataEPIC r

updated 3.9 years ago by suman • 0 • written 3.9 years ago by Bethan • 0

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minfiDataEPIC arrays limma minfi Epigenetics

updated 4.2 years ago by Gordon Smyth 52k • written 4.2 years ago by Jeff ▴ 20

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0