Bioconductor Minet

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minet build.mim

8.1 years ago Pengcheng Yang ▴ 60

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minet plot

8.8 years ago Angel ▴ 40

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minet software error

9.1 years ago Angel ▴ 40

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minet

updated 10.3 years ago by Martin Morgan 25k • written 10.3 years ago by sleidymagaly • 0

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minet qpgraph minet qpgraph

updated 14.9 years ago by Robert Castelo ★ 3.4k • written 14.9 years ago by Weiwei Shi ★ 1.2k

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Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

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