Showing : michael love • reset
0
votes
3
replies
1.3k
views
DESeq2 time course with two genotypes
deseq2 timecourse michael love multiple time points
5.6 years ago cp1015 • 0
0
votes
4
replies
945
views
DESeq2 Design Formula
DESeq2 michael love
updated 6.3 years ago by 43k • written 6.3 years ago by ▴ 10
0
votes
1
reply
1.4k
views
DESeq2 PCA plotting
deseq2 michael love
updated 6.4 years ago by 43k • written 6.4 years ago by • 0
1
vote
11
replies
2.0k
views
Need help with DESeq2's contrast feature
deseq2 michael love
updated 6.7 years ago by 43k • written 6.7 years ago by ▴ 10
2
votes
3
replies
1.9k
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2 timecourse multiple time points mlr michael love
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
5
votes
10
replies
13k
views
Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love Salmon tximport tx2gene
updated 7.2 years ago by 43k • written 7.2 years ago by ▴ 30
6 results • Page 1 of 1
Recent ...
Replies
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Awards • All
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Kinnary ▴ 20
Popular Question to sergisayolspuig ▴ 80
Popular Question to richardallenfriedmanbrooklyn ▴ 30
Scholar to Gordon Smyth 52k
Locations • All
United States, 12 minutes ago
United States, 13 minutes ago
United States, 29 minutes ago
Pakistan, 1 hour ago
The city by the bay, 2 hours ago
Traffic: 1078 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6