Bioconductor Michael love

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deseq2 timecourse michael love multiple time points

5.3 years ago cp1015 • 0

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DESeq2 michael love

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by gkuffel ▴ 10

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deseq2 michael love

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by sam.far.7 • 0

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deseq2 michael love

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by Ashu ▴ 10

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deseq2 timecourse multiple time points mlr michael love

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by ap874 • 0

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Michael Love Salmon tximport tx2gene

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by pvd2107 ▴ 30

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Comment: Csaw normalization strategies - general inquiry by Luca • 0

Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10

Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …

Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k

My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …

Answer: Csaw normalization strategies - general inquiry by Aaron Lun ★ 28k

IIUC you're saying that 68 and 71 are more similar to each other than to all of the other replicates (more efficient IP, if I'm reading you…

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Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

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