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michael love
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DESeq2 time course with two genotypes
deseq2
timecourse
michael love
multiple time points
4.7 years ago
cp1015
• 0
0
votes
4
replies
758
views
DESeq2 Design Formula
DESeq2
michael love
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
gkuffel
▴ 10
0
votes
1
reply
1.1k
views
DESeq2 PCA plotting
deseq2
michael love
updated 5.6 years ago by
Michael Love
42k • written 5.6 years ago by
sam.far.7
• 0
1
vote
11
replies
1.6k
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Need help with DESeq2's contrast feature
deseq2
michael love
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
Ashu
▴ 10
2
votes
3
replies
1.5k
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2
timecourse
multiple time points
mlr
michael love
updated 6.0 years ago by
Michael Love
42k • written 6.0 years ago by
ap874
• 0
5
votes
10
replies
11k
views
Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love
Salmon
tximport
tx2gene
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
pvd2107
▴ 30
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Answer: Ranking the GSEA Results
by
Michael Love
42k
Some posts on this topic: https://www.google.com/search?q=site%3Asupport.bioconductor.org+GSEA+ranking+DESeq2
Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR
by
Gordon Smyth
51k
edgeR allows observation specific offsets (as already pointed out), although I am not confident that would be a reliable solution to your p…
Comment: Research Project - Expanding search funtionality on the GEO database
by
gallantk5
• 0
Thank you I will take a look at those !
Comment: Research Project - Expanding search funtionality on the GEO database
by
gallantk5
• 0
I will send you an email and talk to my advisor about setting up a meeting. Thank you !
Comment: Research Project - Expanding search funtionality on the GEO database
by
Sean Davis
21k
You can use the Bioconductor Annotation packages for the Affymetrix chips of interest. - https://bioconductor.org/packages/release/BiocVie…
Votes
Answer: DESeq2 time course using fitted splines
Answer: DESeq2 time course using fitted splines
Comment: Difference between enrichGO results and Enrichr website results
Answer: Struggling to convert a large list of non-model genes into human orthologs, any
A: makeContrasts from limma overides "i" as a varible
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