Bioconductor MiRNAseq

Showing : miRNAseq • reset

0

votes

0

replies

877

views

miRNAseq TCGAbiolinks TCGAAnalyze_DEA

3.0 years ago Gandino • 0

0

votes

2

replies

888

views

deseq2 miRNASeq designmatrix Batch

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by anshulmbi • 0

0

votes

0

replies

985

views

limma edger voom rnaseq mirnaseq

4.8 years ago atakanekiz ▴ 30

1

vote

1

reply

1.2k

views

deseq2 normalization miRNASeq

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by anshulmbi • 0

4 results • Page 1 of 1

Recent ...

Replies

Comment: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k

Probably nf-core did not run with bootstrap/gibbs replicates. Check the code. See salmon docs on how to turn that on.

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@atpoint Thank you. I did wanted to try using the `quant.sf` files from the `salmon` run by referring edgeR user guide example `4.6 Differe…

Comment: athPkgBuilder data source :missing probesets by bobihanigujjar • 0

In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …

Comment: Crossover design with limma by SamGG ▴ 360

IMHO, here are the missing annotations treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…

Answer: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k

You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…

Votes

Comment: ANOVA like approach of edgeR

Comment: Crossover design with limma

Answer: DESeq2 normalization vs VST vs rlog

Comment: makeContrastsDream for Interaction

Answer: Limma- Print-tip loess normalisation-printer layout information does not match M

Awards • All

Popular Question to Marek Gierlinski ▴ 30

Scholar to Gordon Smyth 52k

Popular Question to mohammedtoufiq91 ▴ 10

Popular Question to Hans-Ulrich Klein ▴ 330