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mgenesim
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Gene similarity by GOSemSim
gosemsim
mgenesim
6.3 years ago
athirak1986
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GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim
mgeneSim
updated 9.0 years ago by
Guangchuang Yu
★ 1.2k • written 9.0 years ago by
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Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
Underpowerment and notable noise/variability, that's the answer.
Comment: DESeq - help with pair wise comparisons
by
ATpoint
★ 4.8k
It's exactly this, no? https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#group-specific-condition-effect…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ktz
• 0
Sorry for the repetitive questions! I'm actually just trying to understand it better so that I can explain to the wet lab biologists in my …
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> Would you advice against running deseq separately for each comparison? You're reducing power even more. Look, since you appear a bit "de…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ktz
• 0
Thank you for the quick reply. Rep 1 is lower than rep 2 in only one group (V_CD45), is this sufficient to affect the results even if I inc…
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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
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